List of LCN machines & backups

Back-up Scheme
For a history of backups of a particular machine: History

* indicates primary user
** indicates a machine that can be moved and taken over by a new user
*** indicates a machine that can be used by anyone in the lab for processing jobs, no individual owners

Useful commands for learning about a machine

Before running any of the commands below, you must ssh to the machine if you are not already working on it.

To learn the operating system version, do:

cat /etc/issue

To learn how much RAM a machine has, do:

free -g

which will display it in GB. Use '-k' for KB. Running the above command will show something that looks like:

              total        used        free      shared  buff/cache   available
Mem:             94           6          76           0          10          86
Swap:            23           0          23

On the 'Mem:' line, under 'total', you can see how much RAM the machine has. The number under the 'free' column in the -/+ buffers/cache row will show how much memory is currently free on the machine.

Still looking at memory on a machine, running:

top

will show you how much memory freeview or another process uses. Look under the 'RES' column to see the physical memory being occupied.

Viewing exvivo data on freeview can easily take up to 46GB of RAM. This will display smoothly if done on a machine with 64GB RAM. It will be choppy on a machine with 48GB of RAM. A fast processor and fast graphics card will also help things display smoothly (i.e. the machine odin, circa 2012, was good enough for this).

To see how much space is free on a machine's hard drive, you must cd to the hard drive location, i.e.:

cd /space/andromeda/1
df -h .

This will show a result that looks like:

Filesystem      Size  Used Avail Use% Mounted on
/dev/sda3       1.8T  950G  812G  54% /local_mount/space/andromeda/1

Look under the 'Avail' column to see how much free space there is to save data. In the above example, there is 812GB of space free on the hard drive andromeda/1.

The above is just one of andromeda's hard drives. Change the '1' to subsequent numbers to see how many hard drives exist.

Tip: If when you run the df command, you see homes:/local_mount/homes/ as the output, then you are checking the free space in your home directory and not the free space on the machine you are using. Space in your home directory is not tied to your physical machine but rather it is tied to servers maintained by the Martinos Center Helpdesk. To see the available storage space on another machine or server, follow the tips outlined on LcnData.

Machines Available For Adoption

Machine

Location

User

Others Storing Data

Others Running jobs

Back-up scheme

e-mail alert?

Notes

Funding

Year Purchased

panamint**

2248N

Eugenio

cmagnain, ohinds

3-->panamint/4, 5-->panamint/6

astevens, ohinds

Eugenio runs intensive jobs on this regularly; hard drive problems; currently on

Eugenio

2009

chinkara**

2249

Dylan's old machine

backed up to its own internal second drive

currently off; Mac machine

atlas

2248A

1-->atlas/2

astevens, af374

48GB of RAM, requires $400 for a replacement hard drive and Linux OS

currently off

2009

kronos

TBD

dicom server

disabled

astevens, almoreau (to remove)

retired; login restricted for FCD IRB

sangwoo

2248C

to l.h.s of istanbul

iman, aniv, cmagnain

1-->sangwoo/3, 2-->sangwoo/3

astevens

retired; 32GB of RAM; out of warranty, does not have console feature can only ssh

Bruce

2007

Machines And Their Owners

Machine

Location

User

Others Storing Data

Others Running jobs

Back-up scheme

e-mail alert?

Notes

Funding

Year Purchased

crash

2204A

Mikael Agn (ma39)

Subhranil

Subhranil

1-->crash/3, 2-->crash/4

astevens

loud fan

Doug

2007

namic

2204B

Ranjit (AY intern), Viviana Siless (vsiless) has data there

1--> swan/3, 2--> swan/4

vsiless, astevens

past warrnty; slow for intensive processes

Anastasia

2006

avebury

2204C

Nivi (AY intern)

1-->avebury/2

astevens,rjj7

24GB of RAM; out of warranty

Andre

2009

antenor

2204D

Robert Jones (rjj7)

jhw30

Anastasia

sand

2226A

Malte Hoffman (mu40

1-->neptune/3, 2-->neptune/4

astevens, mu40

24GB of RAM; out of warranty (purchased 6/9/10)

Bruce

2009

rama

2229

Viviana Siless (vsiless)

1-->rama/3, 2-->rama/4

vsiless, astevens

~42GB of RAM

Bruce

2011

neptune

2229

Robert Frost (srf29)

fischl backup

1-->sand/3, 2-->sand/4

astevens, srf29

24GB of RAM; out of warranty (purchased 5/13/10)

Andre

2009

semmelweis

2240

Lilla Zollei (lzollei)

1-->semmelweis/3, 2-->semmelweis/4

lzollei

Andre

2011

lovasz

2240

Lilla Zollei (lzollei)(BWH property)

1-->turan/6,2-->neumann/3

lzollei

Andre

aspasia

2240

Anastasia Yendiki (ayendiki)

N/A

N/A

ayendiki

oswin

2242

Caroline Magnain (cmagnain)

1-→oswin/2, 3-->oswin/4

cmagnain, astevens

Bruce

2015

voxel

2242

Ruopeng Wang (rpwang)

1-→slum/2

rpwang

Bruce

2015

andromeda

2243

Allison Stevens (astevens)

1-->hercules/2, 3-->hercules/4

astevens

out of warranty. Still CentOS 6

Bruce

2010

papancha

2244

Doug Greve (greve)

1-→papancha/3, 2-→ papancha/4

greve

TBD

Doug

wabasha

2245

Jean Augustinack (jean)

1-->wabasha/2

jean

Jon Polimeni

2015

hercules

2248A

Giorgia Grisot (ggrisot)

1-->andromeda/2, 3-->andromeda/4

ggrisot, lzollei, astevens

48GB of RAM, out of warranty 4/16

Anastasia

2011

tsogyal

2248B

Gaelle Desbordes (gdesbord)

1-→tsogyal/3, 2-->tsogyal/4

gdesbord

Gaelle

istanbul

2248C

Divya (new postdoc)

1-→istanbul/2, 2-->istanbul/4

msabuncu, tge1

24GB of RAM

Mert

2010

galata

2248D

Aina Frau Pascual (af374), msabuncu

1-->galata/2

msabuncu, af374

Mert

2012

bhim

2248E

Amod Jog (aj660)

1-→druyan/3,2-->druyan/4

aj660

Bruce

2017

nyala

2248F

R. Dicamillo (rd521)

1-->nyala/2, 3-->duiker/4

pwighton, andre, rd521

Andre

terrier

2248F

Build Machine CentOS 6 (do not update)

(fs build)

1-->tinia/3, 2-->tinia/4

nicks

36GB of RAM; out of warranty

Nick

2008

odin

2248G

Adrian Dalca (avd12) / Paul Wighton (pwighton)

ayendiki

ayendiki, fischl

15->odin/17, 16->odin/18

lukeliu (Gang Liu), ayendiki, lzollei, astevens

64GB of RAM,NVIDIA Tesla K20 GPU, out of warranty

Mert

2012

monster

2248H

Morgan Fogarty (mf223)

1-->monster/2, 3-->monster/4

mf223, astevens

48GB of RAM; bought 2009; works with small tablet

Bruce

2009

gigantor***

2248I

Storage for LCN use

n/a

n/a

use for archiving data off the cluster. Still CentOS 6

Bruce

2013

neumann

2248I

Segmentation tablet

1-→turan/5, -→lovasz/3

lzollei, astevens

64GB of RAM, has rdesktop

Andre

2009

ruby

2248J

Bram Diamond (brd15)

1--> topaz/2

brd15, astevens

62GB of RAM

Edlow

2014

dharma

2248K

Kimberly Nestor (kn751)

1 --> swan/3, 2 --> swan/4

astevens, kn751

48GB of RAM; bought 2009

Jean

2010

topaz

2248L

Andrew Hoopes (ah221)

Doug

1--> ruby/2

ah221, astevens

62GB of RAM

Bruce

2014

hima**

2248L

Andrew (ah221)

N/A

N/A

Mac; not really used (build machine)

no funding necessary

druyan

2248M

Emma Boyd (eboyd2)

1-→bhim/3, 2-→bhim/4

eboyd2

TBD

TBD

2017

vermis

2248N

Leah Morgan (lmorgan)

1-->vermis/3, 2-->vermis/4

astevens, lmorgan

96GB of RAM

Bruce

2014

turan

2248O

Isik Karahanoglu (ikarahan)

1-->neumann/4, 2-->neumann/5, 3-->lovasz/4, 4-->lovasz/5,7-->turan/8

ikarahan, lzollei

Andre

2013

mercury

2248P

Visitors Desk

Koen

Koen, Oula

1-→mercury/3, 2-→mercury/4

melanie ganz,astevens

NVIDIA Tesla K20 GPU

Koen

2010

riemann***

2248Q

Visitors Desk

1-->riemann/2

mreuter

fixed

Bruce

2007

tinia

2248R

Chiara Maffei (cy281)

huiwang

1-->terrier/3, 2-->terrier/4

astevens, cy281

64GB of RAM; out of warranty

Bruce

2008

tanha

2248S

Jenny Cheng (jyc)

disabled

greve, jyc

bought 2009; out of warranty

Doug

2009

duiker

2249

Andre (andre)

1--> duiker/2 3-->nyala/4

andre

Andre

okapi

2249

Andre (andre)

N/A

N/A

Andre

tiamat

2250

Bruce's linux machine

1-->tiamat/4, 2-->,tiamat/5, 3-->tiamat/6

fischl, astevens

Bruce

2015

pluto

2250

Bruce's Win7 machine

backups disabled

N/A

out of warranty (purchased 6/9/10)

no funding necessary

Fischl-home

2250

Bruce Fischl (fischl)

N/A

N/A

TBD

Pstract

2250

Bruce Fischl (fischl)

N/A

N/A

TBD

Iman-desktop

2251

Iman Aganj (iman)

N/A

N/A

No Funding Necessary

Hilbert

2251 (swing)

Martin Reuter (mreuter) / Koen Van Leemput (koen)

1-->Hilbert/4, 2--> Hilbert/5, 3-->Hilbert/6

mreuter

TBD

Himalayas

2282

Hui Wang (huiwang)

n/a

n/a

optics division

David Boas

Other Machines

Machine

Location

User

Others Storing Data

Others Running jobs

Back-up scheme

e-mail alert?

Notes

Funding

Year Purchased

nike***

South Central with Sam

for LCN use

1-→nike/2

516GB of RAM; Tesla K40 GPU; use it to run jobs fast; load huge datasets in freeview that use a lot of RAM; run big RAM jobs

Bruce

2013

atalanta***

South Central with Sam

for LCN use after asking AY

1-->atalanta/2

516GB of RAM; Tesla K40 GPU; use it to run jobs fast; load huge datasets in freeview that use a lot of RAM; run big RAM jobs

Anastasia

nicki***

South Central with Sam

for LCN use

1-→nicky/2

516GB of RAM; use it to run jobs fast; load huge datasets in freeview that use a lot of RAM; run big RAM jobs

Bruce

2015

hydra***

for Martinos Center use

old, but 120GB RAM for running jobs

TBD

hades***

for Martinos Center use

disabled

use it to run jobs fast; load huge datasets in freeview that use a lot of RAM; run big RAM jobs

TBD

avadhuti

South Central 1113 N

gdesbord

1-->avadhuti/2

gdesbord

Gaelle

suez

streaming cart behind 2248D/ RA desks

MR streaming

haze

RA desks

fs course server

octavius

OCT rig

Hui

Bruce

2014

duffman

OCT rig

Hui

Bruce

swan

South Central 1113 Seat 0

1-->namic/3, 2-->namic/4

gdesbord

out of warranty (purchased 10/22/10)

Gaelle

2009

hopper

South Central w/ Sam; Lilla's

N/A

N/A

194GB of RAM

Andre

oribi

South Central with Sam

Andre

Andre, Dylan, exvivo scans

Andre, Dylan, exvivo scan processing

process offline recons

Andre

gust

2248A

Andrew

fs builds, Matti (mne compiles)

Mac mini

no funding necessary

Dead & gone

asterix, titan, jupiter, gabi, fishie, titan, jupiter, gabi, mist (powerpc build machine), storm (powerpc leopard build machine), minerva, erdos, oceanic

Laptops

Laptop name

Model

Owner

OS

Processor

Memory

Disk size

Date/Year purchased

Encrypted with

Previous Owners

Notes

buddy

MacBook Pro Retina 15 inch

Allison Stevens

OS X

2.3 GHz Intel Core i7

16 GB

512 GB

2013

n/a

has some structural damage; lines on bottom of screen

bonobo

MacBook Pro 15

Bram Diamond

OS X

2.6 GHz Intel Core i7

16 GB

251 GB

2017

Zeke

hippo

MacBook Pro 15

Leah Morgan

OS X

2.8 GHz Intel Core i7

16 GB

1 TB

2017

New

samoyed

MacBook Pro 15

Morgan Fogarty

OS X

2.8 GHz Intel Core i7

16 GB

1 TB

2017

New

tamarin

MacBook Pro Retina 15

Andrew Hoopes

OS X

2.8 GHz Intel Core i7

16 GB

1 TB

2015

Ani

sallyride

MacBook Pro Retina 15

Emma Boyd

OS X

2.8 GHz Intel Core i7

16 GB

500 GB

2014

Lee??

Old Laptops

Model

Owner

OS

Encrypted with

MAC/

Notes

fischl-panasonic-2009

Panasonic CF-F8

Allison

Windows XP

Safeboot (McAfee Endpoint)

Kristen's old laptop

MARTINOS-FISCHL

Panasonic CF-Y4

Louis

Windows XP

TrueCrypt

MARTINOS-SITA

Lenovo Thinkpad

2nd Fl Closet

Windows XP

Sita's old laptop

martinos-mar35

Panasonic CF-Y4

Maritza

Windows XP

AS-LAPTOP

Panasonic CF-Y4

Bruce's office

Windows XP

Safeboot (McAfee Endpoint)

Allison's old laptop; very slow

Lap laptop

Windows XP

MARTINOS-KHOA

Panasonic CF-Y4

Allison currently

Linux

TrueCrypt

very old

Xiao

Dell Precision M70

2nd Fl Closet

Windows XP

TrueCrypt

mtl_connectivity vnback stimulus

Dell Precision M90

bruce's office

Linux

mtl_connectivity LCMS stimulus

Superfluous

tisdall (laptop)

backed up to an external drive on Dylan's desk

n/a

n/a

n/a

List of Ethernet ports (old info)

Ports that start with a 6 are gigabit ports.

Ethernet Plate

A

B

C

D

2247 2-42

6-7

n/a

n/a

2247-1

2-43

6-8

2-44

6-9

2247-2

2-45

6-36

n/a

n/a

2247-3

2-46

6-30

n/a

n/a

2247-4

2-47

6-1

2-48

6-2

2247-5

3-1

6-34

n/a

n/a

2247-6

3-2

6-27

n/a

n/a

2247-7

3-3

3-4

3-5

6-28

2247-8

3-6

3-7

n/a

n/a

2248 3-8

3-9

6-44

n/a

6-45

2248-1

3-10

3-11

n/a

n/a

2248-2

3-12

6-6

n/a

n/a

2248-3

3-13

3-14

n/a

n/a

2248-4

3-15

6-19

n/a

n/a

2248-5

3-16

3-17

n/a

n/a

2248-6

6-13

3-18

n/a

n/a

2248-7

3-19

6-12

n/a

n/a

2248-8

3-20

6-20

n/a

n/a

2248-9

3-21

6-5

n/a

n/a

2248-10

3-22

6-25

n/a

n/a

2248-11

3-23

3-24

n/a

n/a

2248-12

3-25

6-32

n/a

n/a

2248-13

3-26

3-27

n/a

n/a

2248-14

3-28

6-26

n/a

n/a

2248-15

3-29

3-30

n/a

n/a

2248-16

3-31

3-32

n/a

n/a

7/21/15- 2248-6 B is now a gigabit port. (Partners IT upgraded it.) A is not a gigabit port. (not sure how to get these numbers above- Allison M.)

Map of LCN computer (left) and member layout (right) around the office

LCN_lab_layout_for_LCNComputers_wiki.jpg

NOTE: The original map above can be found here: /autofs/space/andromeda_001/users/lcn/LCN_lab_layout_for_LCNComputers_wiki.pptx for editing. Once saved, export the powerpoint slide to a jpeg and upload to this wiki as an attachment.

LCNComputers (last edited 2018-07-31 10:42:19 by LeahMorgan)