= Needs to be incorporated =


Segmented volume

    * How can I create a segmented volume and see it?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#seg >

Template Atlas

    * How can I create a template atlas file?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#template >

File name extensions

    * What is the use of @ and # for filename?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound >

Talairach transformed image

    * How can I create talairach transformed image?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform >

Data formats in lh/rh.sulc.

    * What are the data in *lh.sulc* and rh.sulc?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc >

Cortical parcellation

    * How can I do *cortical parcellation*?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc >

Subcortical segmentation atlas creation

    * How can I create *subcortical segmentation atlas*?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#gca >

Using the subcortical segmentation to create automatic segmentation

    * How can I create *subcortical segmentation*?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor >

Defacing a subject

    * How can I do the defacing of a subject?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#deface >

Monkey brain processing

    * How can I normalize Monkey brain?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey >

DICOM file format info

    * How can I see a *DICOM functional image*?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom >


= Already incorporated =

Coordinate Systems

    * What kind of coordinate systems are used?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords >

Low-res vs. high-res vertex positions

    * What is the value of a lowres vertex position given a highres
      vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >

Direction cosines

    * How is the direction cosine information obtained?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos >


DICOM file format info

    * DICOM Specifications
      < http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html >


Medical Image Formats info.

    * FAQ on Medical Image Format
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat >

Ftp access

    * Ftp access for sending data and receiving binaries from us?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp >


CVS remotely

    * How can I CVS checkout files remotely?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs >

PBS (Not relevant to Documentation Wiki)

    * How can I use the batch queuing system *PBS* on seychelles?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS >
    * How can I hold the queue until some queues finish?

DICOM file format info

    * How can I get the *image position/orientation of a DICOM file*?

Tkmedit and talairach coordinates

    * Why tksurfer shows non-unit talairach even though talairach.xfm is
      a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >