## Note: This page was created with the CommandTemplate
##
## If you're modifying this page please take a look at the
## latest version of CommandTemplate to ensure that you're
## using the latest version of the CommandTemplate
##
## See HelpOnCommandTemplate for description of formatting

'''Index'''
<<TableOfContents>>


= Name =
mri_wmfilter - creates white matter (wm) mask

= Synopsis =
mri_wmfilter <subjectname> [option ...]

= Arguments =
== Positional Arguments ==
|| <subjectname> || subject name ||

== Required Flagged Arguments ==
none

== Optional Flagged Arguments ==
none
 
= Outputs =
|| <$SUBJECTS_DIR/<subject_name>/wm> || wm volume ||

= Description =
[[mri_wmfilter]] reads an input volume from
$SUBJECTS_DIR/<subject_name>/brain and set all voxels which
are determined to be other than white matter to 0, writing
the output volume to $SUBJECTS_DIR/<subject_name>/wm.

= Examples =
== Example 1 ==
??

= Bugs =
none

= See Also =
[[othercommand1]], [[othercommand2]]

= Links =
FreeSurfer

= Methods Description =
{{{
??
}}}

= References =
[[References/Lastname###]]

= Reporting Bugs =
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

= Author/s =
BruceFischl