## Note: This page was created with the CommandTemplate ## ## If you're modifying this page please take a look at the ## latest version of CommandTemplate to ensure that you're ## using the latest version of the CommandTemplate ## ## See HelpOnCommandTemplate for description of formatting '''Index''' <> = Name = sphsmooth-sess - smoothes hemodynamic averages on the surface = Synopsis = sphsmooth-sess ?? = Arguments = == Positional Arguments == none == Required Flagged Arguments == ?? == Optional Flagged Arguments == ||-smoothsteps || number of smoothing steps|| ||-analysis || session-level functional analysis name|| ||-insphdir || input spherical space directory name || ||-outsphdir || output spherical space directory name|| ||-hemi || = lh or rh|| ||-sf || ...|| ||-df || ...|| ||-s ||...|| ||-d ||...|| ||-umask || set unix file permission mask|| ||-scriptonly || don't run, just generate a script|| ||-version || print version and exit|| = Outputs = || || ?? || = Description = [[sphsmooth-sess]] will smooth an analysis on the surface. The results of the analysis must have been resampled onto the sphere using [[func2sph-sess]]. By default, the input directory will be sph (as created by [[func2sph-sess]]). The user must supply the output directory. To access the smoothed data in subsequent calls (eg, [[isxavg-re-sess]] or [[isxavg-fe-sess]]), add -spacedir followed by the name given to the output directory. The amount of smoothing is approximately given by the formula {{{fwhm = (2.3*sqrt(smoothsteps*2/pi))/1.24}}} where fwhm is in mm on the surface and smoothsteps is the number of smoothing steps supplied by the -smoothsteps flag. A single smoothing step is when each vertex is averaged with its neighbors. This will be performed iteratively as many times as specified. How much smoothing you should apply depends on your data. Ideally, it should be the same as your activation size. = Examples = == Example 1 == ?? == Example 2 == ?? = Bugs = ?? = See Also = [[func2sph-sess]] = Links = FsFast = Methods Description = {{{ ?? }}} = References = [[References/Lastname###]] = Reporting Bugs = Report bugs to = Author/s = DougGreve