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See also [[http://www.na-mic.org/Wiki/index.php/Mbirn:_Defacer_for_structural_MRI|MBIRN page]]
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Example: Use gunzip to decompress these downloads, ie.:
{{{
gunzip mri_deface-v1.22-Linux64.gz
cp mri_deface-v1.22-Linux64.gz mri_deface
chmod a+x mri_deface
gunzip talairach_mixed_with_skull.gca.gz
gunzip face.gca.gz
}}}
Then, example usage, using your orig.mgz:

Automated Defacing Tools

defacing_figure.jpg

See also MBIRN page

Note: A license file is no longer necessary to use these tools:

Use gunzip to decompress these downloads, ie.: 

gunzip mri_deface-v1.22-Linux64.gz
cp mri_deface-v1.22-Linux64.gz mri_deface
chmod a+x mri_deface
gunzip talairach_mixed_with_skull.gca.gz
gunzip face.gca.gz

Then, example usage, using your orig.mgz: 

mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz

AutomatedDefacingTools (last edited 2022-08-05 14:31:35 by DougGreve)