Automated Defacing Tools
Note: A license file is no longer necessary to use these tools:
Use gunzip to decompress these downloads, ie.:
gunzip mri_deface-v1.22-Linux64.gz cp mri_deface-v1.22-Linux64.gz mri_deface chmod a+x mri_deface gunzip talairach_mixed_with_skull.gca.gz gunzip face.gca.gz
Then, example usage, using your orig.mgz:
mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz