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| #pragma section-numbers on | [wiki:Self:FreeSurferWiki top] |
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| [[Navigation(children)]] | == FreeSurfer File Formats == |
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| '''Index''' | FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats. |
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| [[TableOfContents]] | === 1.0 FreeSurfer Native Formats === |
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= FreeSurfer Native Formats = == Volume == |
'''1.1 Volume''' [[BR]] * [wiki:Self:FsTutorial/CorFormat COR] [[BR]] * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]] * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]] |
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| * mgz | |
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* bfloat * bshort * COR |
'''1.2 Surface''' [[BR]] |
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| == Surface == | * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats] |
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* surface (ascii/binary) * curv * w * annot * patch * gcs |
'''1.3 Transform''' [[BR]] |
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| == Transforms == | |
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| === 2.0 External Formats === | |
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= FreeSurfer Dependency Formats = == Volume == * ["MINC"] * Analyze * ["DICOM"] |
* [wiki:Self:FsTutorial/MincFormat MINC] [[BR]] * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]] * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]] |
[wiki:FreeSurferWiki top]
FreeSurfer File Formats
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
1.0 FreeSurfer Native Formats
1.1 Volume BR
[wiki:FsTutorial/CorFormat COR] BR
[wiki:FsTutorial/BshortFormat bshort] BR
[wiki:FsTutorial/BfloatFormat bfloat] BR
- mgh
- mgz
- gca
1.2 Surface BR
[http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats]
1.3 Transform BR
- dat
- xfm
- m3d
- lta
2.0 External Formats
[wiki:FsTutorial/MincFormat MINC] BR
[wiki:FsTutorial/AnalyzeFormat Analyze] BR
[wiki:FsTutorial/DicomFormat DICOM] BR