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← Revision 26 as of 2015-10-26 12:34:13 ⇥
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| [wiki:Self:FreeSurferWiki top] | [[FreeSurferWiki|top]] |
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| == FreeSurfer File Formats == |
= FreeSurfer File Formats = |
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| === 1.0 FreeSurfer Native Formats === | == 1.0 FreeSurfer Native Formats == '''1.1 Volume''' <<BR>> |
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| '''1.1 Volume''' [[BR]] | * [[FsTutorial/CorFormat|COR]] <<BR>> * [[FsTutorial/BshortFormat|bshort]] <<BR>> * [[FsTutorial/BfloatFormat|bfloat]] <<BR>> * [[FsTutorial/MghFormat|mgh/mgz]] <<BR>> * [[FsTutorial/GcaFormat|gca]] <<BR>> |
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| * [wiki:Self:FsTutorial/CorFormat COR] [[BR]] * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]] * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]] * mgh * mgz * gca |
'''1.2 Surface''' <<BR>> |
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| '''1.2 Surface''' [[BR]] | * FreeSurfer Surface File Formats - !FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats. * Surface registration template "tif" content and format: TemplateTifImageFiles |
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| * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats] | '''1.3 Transform''' <<BR>> |
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| '''1.3 Transform''' [[BR]] * dat |
* [[RegisterDat|register.dat]] |
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| * lta | * [[FsTutorial/LtaFormat|lta]] |
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| === 2.0 External Formats === | '''1.4 Labels, Color Lookup Tables and Annotation Files''' |
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| * [wiki:Self:FsTutorial/MincFormat MINC] [[BR]] * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]] * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]] |
* [[LabelsClutsAnnotationFiles]] == 2.0 External Formats == * [[FsTutorial/MincFormat|MINC]] <<BR>> * [[FsTutorial/AnalyzeFormat|Analyze]] <<BR>> * [[FsTutorial/DicomFormat|DICOM]] <<BR>> |
FreeSurfer File Formats
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
1.0 FreeSurfer Native Formats
1.1 Volume
1.2 Surface
FreeSurfer Surface File Formats - FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats.
Surface registration template "tif" content and format: TemplateTifImageFiles
1.3 Transform
- xfm
- m3d
1.4 Labels, Color Lookup Tables and Annotation Files