|
Size: 1023
Comment:
|
Size: 1387
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| [wiki:Self:FreeSurferWiki top] | [[FreeSurferWiki|top]] |
| Line 9: | Line 9: |
| '''1.1 Volume''' [[BR]] | '''1.1 Volume''' <<BR>> |
| Line 11: | Line 11: |
| * [wiki:Self:FsTutorial/CorFormat COR] [[BR]] * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]] * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]] * mgh * mgz * gca |
* [[FsTutorial/CorFormat|COR]] <<BR>> * [[FsTutorial/BshortFormat|bshort]] <<BR>> * [[FsTutorial/BfloatFormat|bfloat]] <<BR>> * [[FsTutorial/MghFormat|mgh/mgz]] <<BR>> * [[FsTutorial/GcaFormat|gca]] <<BR>> |
| Line 18: | Line 17: |
| '''1.2 Surface''' [[BR]] | '''1.2 Surface''' <<BR>> |
| Line 20: | Line 19: |
| * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats] | * [[http://wideman-one.com/gw/brain/fs/surfacefileformats.htm|FreeSurfer Surface File Formats]] !FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats. * Surface registration template "tif" content and format: TemplateTifImageFiles |
| Line 22: | Line 22: |
| '''1.3 Transform''' [[BR]] | '''1.3 Transform''' <<BR>> |
| Line 24: | Line 24: |
| * dat | * [[RegisterDat|register.dat]] |
| Line 27: | Line 27: |
| * lta | * [[FsTutorial/LtaFormat|lta]] |
| Line 31: | Line 31: |
| * [wiki:Self:FsTutorial/MincFormat MINC] [[BR]] * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]] * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]] |
* [[FsTutorial/MincFormat|MINC]] <<BR>> * [[FsTutorial/AnalyzeFormat|Analyze]] <<BR>> * [[FsTutorial/DicomFormat|DICOM]] <<BR>> * See also: [[http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html|MRI Image file formats (volume or slices)]] <<BR>> |
FreeSurfer File Formats
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
1.0 FreeSurfer Native Formats
1.1 Volume
1.2 Surface
FreeSurfer Surface File Formats FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats.
Surface registration template "tif" content and format: TemplateTifImageFiles
1.3 Transform
- xfm
- m3d