Differences between revisions 5 and 19 (spanning 14 versions)
⇤ ← Revision 5 as of 2004-08-02 06:25:42 →
Size: 289
Editor: DavidTuch
Comment: Added surface file formats and transforms
← Revision 19 as of 2008-01-24 13:34:13 → ⇥
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Editor: GrahamWideman
Comment:
Deletions are marked like this. Additions are marked like this.
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#pragma section-numbers on [wiki:Self:FreeSurferWiki top]
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[[Navigation(children)]] = FreeSurfer File Formats =
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= Index =
[[TableOfContents]]		 FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
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= Volume =
 * mgh
 * gca		 == 1.0 FreeSurfer Native Formats ==
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 * bfloat
 * bshort
 * COR		 '''1.1 Volume''' [[BR]]
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= Surface =  * [wiki:Self:FsTutorial/CorFormat COR] [[BR]]
 * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]]
 * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]]
 * [wiki:Self:FsTutorial/MghFormat mgh/mgz] [[BR]]
 * [wiki:Self:FsTutorial/GcaFormat gca] [[BR]]
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 * surface (ascii/binary)
 * curv
 * w
 * annot
 * patch
 * gcs		 '''1.2 Surface''' [[BR]]
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= Transforms = ----- /!\ Edit conflict! Other version: -----
 * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats] !FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats.
 * Surface registration template "tif" content and format: TemplateTifImageFiles

'''1.3 Transform''' [[BR]]
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== 2.0 External Formats ==

 * [wiki:Self:FsTutorial/MincFormat MINC] [[BR]]
 * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]]
 * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]]
 * See also: [http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html MRI Image file formats (volume or slices)] [[BR]]

[wiki:FreeSurferWiki top]

FreeSurfer File Formats

FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.

1.0 FreeSurfer Native Formats

1.1 Volume BR

1.2 Surface BR

/!\ Edit conflict! Other version:

1.3 Transform BR

  • dat
  • xfm
  • m3d
  • lta

2.0 External Formats

FileFormats (last edited 2015-10-26 12:34:13 by AllisonStevens)