|
Size: 289
Comment: Added surface file formats and transforms
|
Size: 1387
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| #pragma section-numbers on | [[FreeSurferWiki|top]] |
| Line 3: | Line 3: |
| [[Navigation(children)]] | = FreeSurfer File Formats = |
| Line 5: | Line 5: |
| = Index = [[TableOfContents]] |
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats. |
| Line 8: | Line 7: |
| = Volume = * mgh * gca |
== 1.0 FreeSurfer Native Formats == |
| Line 12: | Line 9: |
| * bfloat * bshort * COR |
'''1.1 Volume''' <<BR>> |
| Line 16: | Line 11: |
| = Surface = | * [[FsTutorial/CorFormat|COR]] <<BR>> * [[FsTutorial/BshortFormat|bshort]] <<BR>> * [[FsTutorial/BfloatFormat|bfloat]] <<BR>> * [[FsTutorial/MghFormat|mgh/mgz]] <<BR>> * [[FsTutorial/GcaFormat|gca]] <<BR>> |
| Line 18: | Line 17: |
| * surface (ascii/binary) * curv * w * annot * patch * gcs |
'''1.2 Surface''' <<BR>> |
| Line 25: | Line 19: |
| = Transforms = * dat |
* [[http://wideman-one.com/gw/brain/fs/surfacefileformats.htm|FreeSurfer Surface File Formats]] !FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats. * Surface registration template "tif" content and format: TemplateTifImageFiles '''1.3 Transform''' <<BR>> * [[RegisterDat|register.dat]] |
| Line 29: | Line 27: |
| * lta | * [[FsTutorial/LtaFormat|lta]] == 2.0 External Formats == * [[FsTutorial/MincFormat|MINC]] <<BR>> * [[FsTutorial/AnalyzeFormat|Analyze]] <<BR>> * [[FsTutorial/DicomFormat|DICOM]] <<BR>> * See also: [[http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html|MRI Image file formats (volume or slices)]] <<BR>> |
FreeSurfer File Formats
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
1.0 FreeSurfer Native Formats
1.1 Volume
1.2 Surface
FreeSurfer Surface File Formats FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats.
Surface registration template "tif" content and format: TemplateTifImageFiles
1.3 Transform
- xfm
- m3d