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Comment: Added FreeSurfer dependency file format heading
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#pragma section-numbers on [wiki:Self:FreeSurferWiki top]
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[[Navigation(children)]] = FreeSurfer File Formats =
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= Index =
[[TableOfContents]]		 FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
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= FreeSurfer Native Formats =
== Volume ==
 * mgh
 * gca		 == 1.0 FreeSurfer Native Formats ==
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 * bfloat
 * bshort
 * COR		 '''1.1 Volume''' [[BR]]
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== Surface ==  * [wiki:Self:FsTutorial/CorFormat COR] [[BR]]
 * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]]
 * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]]
 * [wiki:Self:FsTutorial/MghFormat mgh/mgz] [[BR]]
 * [wiki:Self:FsTutorial/GcaFormat gca] [[BR]]
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 * surface (ascii/binary)
 * curv
 * w
 * annot
 * patch
 * gcs		 '''1.2 Surface''' [[BR]]
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== Transforms ==  * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats] !FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats.
 * Surface registration template "tif" content and format: TemplateTifImageFiles

'''1.3 Transform''' [[BR]]
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== 2.0 External Formats ==
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= FreeSurfer Dependency Formats =
== Volume ==
 * mnc
 * img (Analyze7.5)		  * [wiki:Self:FsTutorial/MincFormat MINC] [[BR]]
 * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]]
 * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]]
 * See also: [http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html MRI Image file formats (volume or slices)] [[BR]]

[wiki:FreeSurferWiki top]

FreeSurfer File Formats

FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.

1.0 FreeSurfer Native Formats

1.1 Volume BR

1.2 Surface BR

1.3 Transform BR

  • dat
  • xfm
  • m3d
  • lta

2.0 External Formats

FileFormats (last edited 2015-10-26 12:34:13 by AllisonStevens)