Results 201 - 225 of 362 results out of about 3772 pages. (1.16 seconds)
- LongitudinalEdits . . . 2 matches
- ...nts(2)>>'''
* This page describes how edits are done in the longitudinal stream of FreeSurfer versions 5.1 and up.
* If you use this software for your study, please cite our p...
- JorgeJovicich . . . 2 matches
- ...one really ||
## ||'''Authored:''' || Programs ||
||'''WorkFlows used:''' || FreeSurferWorkFlows ||
||'''Tools used:''' || FreeSurfer ||
|| <<BR>> || <<B...
- FsTutorial/MulitModalRegistration_tktools . . . 2 matches
- ...s to get you acquainted with the concepts need to perform multi-modal integration in FreeSurfer using fMRI and DTI analysis. You will not learn how to perform fMRI or DTI analysis ...
- FsTutorial/MulitModalFmri . . . 2 matches
- ...s to get you acquainted with the concepts need to perform multi-modal integration in FreeSurfer using fMRI and DTI analysis. You will not learn how to perform fMRI or DTI analysis ...
- FsTutorial/LongSkullStripFix2 . . . 2 matches
- ...es.
<<TableOfContents>>
=== Identifying the problem ===
Very rarely, you will see FreeSurfer fail completely in the skullstrip step (usually associated with many other errors) a...
- FsTutorial/Glossary . . . 2 matches
- ...aging multiple structural acquisitions from the native magnet format into the native FreeSurfer format (see COR files).
== COR files ==
The native file format used by FreeSurf...
- FsTutorial/GlmReview . . . 2 matches
- ...X''''' is also commonly called the ''design matrix'' and it can be user-specified in FreeSurfer in the form of an FSGD (FreeSurfer Group Descriptor) file, as the exercises below il...
- FsTutorial/FreeviewDemo . . . 2 matches
- ...[[FsTutorial|Back to list of tutorials]]
If you're attending the FreeSurfer course, you have the option to follow my step-by-step instructions or mirror my screen by clicking on [...
- FsFastTutorialV4.5/300_Download_data . . . 2 matches
- ... This compressed file will unpack into several subdirectories. The Interfacing With FreeSurfer section provides further details.
You will notice that Berts anatomical data are ...
- FsFastTutorialV4.5/000_Frontmatter . . . 2 matches
- ...al maps that can be overlaid directly onto the structural MR data you generate using FreeSurfer. This tutorial will help you process the distributed functional MR data set of a sin...
- FsFastParadigmFile . . . 2 matches
- ...This page describes the paradigm file format for FreeSurfer version 5.0 and higher
The paradigm file is a simple ASCII text file that describes which stimulus was present when. Yo...
- FsFastIndividualRetinotopyAnalysis . . . 2 matches
- ...This page describes how to run the retinotopy analysis of the FreeSurfer Functional Analysis Stream (FS-FAST) version 5.X. You will need to know how to run FS-FAST for genernal tas...
- FsFastGuiBug . . . 2 matches
- ...PLEASE READ CAREFULLY!!!
This bug exists in Freesurfer v4.3.0 and earlier. The bug is fixed in v4.3.1 and later.
This page describes the bug in FSFAST in which first-level analy...
- DodsDoss . . . 2 matches
- ...SGD]] file and is used by mri_glmfit and qdec. The terms DODS and DOSS are unique to FreeSurfer (ie, you won't find them in a stats textbook:). For examples of FSGD files see [[Fsg...
- DevelopersGuide/CodingGuide . . . 2 matches
- ...eOfContents>>
This page is a loose collection of various coding guides and tips for FreeSurfer programmers.
== VTK cvs commit Guidelines and Coding Standards ==
VTK has excellen...
- DevelopersGuide/CUDAEnabling . . . 2 matches
- ...om mri_em_register_cuda.
* `mri_em_register_cuda_LDADD` - in addition to the other FreeSurfer libraries, it contains `CUDA_LIBS` exported by `configure.in` which has the details ...
- BruceFischl . . . 2 matches
- ...rain||
||'''Skills:''' || some math, some programming||
||'''Authored:''' || FreeSurfer||
||'''Tools used:''' || FreeSurfer, FSL||
||<<BR>> || <<BR>> ||
||'''Email:''' ...
- BlenderModel . . . 2 matches
- ...Sometimes the Visualization apps included in FreeSurfer cannot generate some rendering we need to publish a paper or make some presentation. One solution for this is to import this...
- vss-dump . . . 1 match
- ...ample 1 ==
??
== Example 2 ==
??
= Bugs =
??
= See Also =
[[mri_info]]
= Links =
FreeSurfer, FsFast
= Methods Description =
NA
= References =
NA
= Reporting Bugs =
Report bu...
- unpacksdcmdir . . . 1 match
- ...ack.log
= Bugs =
None
= See Also =
[[othercommand1]], [[othercommand2]]
= Links =
FreeSurfer, FsFast
= Methods Description =
{{{
description
description
}}}
= References =
[[R...
- tkregister2 . . . 1 match
- ...[[tkregister2]] is an [[Application]] in the FreeSurfer ToolSet.
See
* TkRegister2Guide
...
- tkregister-sess . . . 1 match
- ..., the other a control window.
= Bugs =
???
= See Also =
[[tkregister2]]
= Links =
FreeSurfer, FsFast
= Methods Description =
{{{
???
}}}
= References =
[[References/Lastname##...
- talairach2 . . . 1 match
- ...alairach2 <subjid> -mgz
== Example 2 ==
??
= Bugs =
None
= See Also =
= Links =
FreeSurfer, FsFast
= Methods Description =
{{{
N/A
}}}
= References =
http://www.bic.mni.mcgi...
- talairach . . . 1 match
- ...the MNI305
atlas using Avi Snyders 4dfp suite of image registration tools,
through a FreeSurfer script called talairach_avi. Several of the downstream
programs use talairach coordi...
- surf-sess . . . 1 match
- ...es =
== Example 1 ==
??
== Example 2 ==
??
= Bugs =
??
= See Also =
??
= Links =
FreeSurfer, FsFast
= Methods Description =
{{{
??
}}}
= References =
[[References/Lastname###...