Results 76 - 100 of 362 results out of about 3772 pages. (1.14 seconds)
- FsTutorial/GroupAnalysis_tktools . . . 9 matches
- ... are the commands that you need to run before getting started:
{{{
tcsh
source your_freesurfer_dir/SetUpFreeSurfer.csh
setenv SUBJECTS_DIR $TUTORIAL_DATA/buckner_data/tutorial_sub...
- FsPalm . . . 9 matches
- ...{{{#!html
<h1>Integrating FreeSurfer and PALM</h1>
}}}
<<TableOfContents(3)>>
=== Introduction ===
fspalm is a FreeSurfer script written to aid in the use of Permutation Analysis ...
- CoursePrep . . . 9 matches
- ...= How to Prepare for the FreeSurfer Course =
== "Required" Preparation ==
If you are a beginner to !FreeSurfer, the following content is HIGHLY recommended to enhance your enjoym...
- Brainstorm . . . 9 matches
- ...analysis (visualization, processing and advanced source modeling).
Integration with Freesurfer (product of François Tade) includes the following:
== Subject co-registration ==
Th...
- mri_vol2vol . . . 8 matches
- ...vol - Resamples a volume into another field-of-view using varous types of matrices (!FreeSurfer, FSL, SPM, and MNI).
= Synopsis =
mri_vol2vol
= Arguments =
== Required Flagged ...
- WMH-SynthSeg . . . 8 matches
- ... work around this by downloading WMH-SynthSeg independently (from https://github.com/freesurfer/freesurfer/) and running it from FreeSurfer 7.4.1. Apologies for the inconvenience!'...
- UnixTutorial . . . 8 matches
- ...nals? ==
Throughout this course you will be using the Unix terminal to interact with FreeSurfer and access data. Many computer programs for scientific use are designed to be operat...
- SynthSR . . . 8 matches
- ...= SynthSR =
'''''This functionality was made available in version 7.3.0 of FreeSurfer.'''''
<<BR>>
<<BR>>
'''''Please note that version 2.0 of the tool was released in the develop...
- SubmillimeterRecon . . . 8 matches
- ...bmillimeter resolution =
See also HighFieldRecon
This page describes how to run the FreeSurfer recon-all for data with voxel sizes less than 1mm3 at native resolution. Several Fre...
- SoftwareEngineer . . . 8 matches
- ...
= Software Engineer - Job Opening =
FreeSurfer is a multi-platform suite of software tools for the analysis of brain imaging data in use by thousands of neuroscientists, enginee...
- PetSurferKmTutorial . . . 8 matches
- ...effect in the bindind potentials.
= Getting the Data (not necessary for the Boston FreeSurfer Course) =
= Analyzing an Individual Subject =
Change directory into the project fol...
- LabelsClutsAnnotationFiles . . . 8 matches
- ...Color Lookup Tables and Annotation Files =
This page discusses the basic concepts of FreeSurfer files that relate to identifying regions-of-interest for surfaces and volumes, namel...
- FsTutorial/FuncRegistration . . . 8 matches
- ...[[FsTutorial|top]] | [[FsTutorial/SpmFreeSurfer|previous]]
== FreeSurfer Tutorial: Registration of functional and structural data (25 minutes of exercises) ==
In FreeSurfer, a pa...
- FsFastTutorialV4.5/930_Run_functional_and_structural_registration . . . 8 matches
- ...ctory where you keep the subjects whose anatomical data have been reconstructed with FreeSurfer..
=== INTERFACING WITH FREESURFER ===
Linking into Freesurfer allows the user to v...
- bbregister . . . 7 matches
- ... required that you have an anatomical scan of the
subject that has been analyzed in freesurfer. Those using bbregister should site: Greve, D. N., and Fischl, B. (2009). "Accurate...
- ResearchAssistant . . . 7 matches
- ... working in a fast-paced computational neuroimaging lab well known for its software, FreeSurfer. The lab is comprised of faculty, postdocs, graduate students, and research assistan...
- QATools . . . 7 matches
- ...= FreeSurfer 5.3 QA Tools =
== Deprecated ==
Note: The QA tools described in this page were developed for !FreeSurfer 5.3. For versions 7+, use the following executable to comput...
- NextGenCode . . . 7 matches
- ...
<<TableOfContents(3)>>
''a grab-bag of notes on what we'd like to see in the ideal freesurfer source code environment, and runtime''
== Newer respository ==
* evaluate DVCS li...
- LongitudinalProcessingPreV4.4 . . . 7 matches
- ...g increased interest and popularity in various aspects of neuroscience.
The default FreeSurfer pipeline is designed for the processing of individual data set, and thus not optimal...
- HistoricalReconstruction . . . 7 matches
- ...[[FreeSurferWorkFlows|top]] | [[RecommendedReconstruction|previous]] | [[SubcorticalSegmentation|next]]
This workflow uses the older version of FreeSurfer, in which manual editing...
- FsTutorial/MultiModalDtiIndividual_tktools . . . 7 matches
- ...s to give you experience with the integration of Diffusion Tensor Imaging (DTI) with FreeSurfer. The data were collected at MGH as part of the MIND.
= DTI Basics =
It is assumed t...
- FsTutorial/GroupAnalysisDng . . . 7 matches
- ...tutorial is designed to introduce you to the "command-line" group
analysis stream in FreeSurfer (as opposed to QDEC which is
GUI-driven), including correction for multiple comparis...
- FsFastFunctionalConnectivityWalkthrough . . . 7 matches
- ...ased analysis documentation
as found in [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.fsfast.ppt|FS-FAST powerpoint]] and the [[http://surfer.nmr.mgh.harvard.edu/fswiki/F...
- FileFormats . . . 7 matches
- ...[[FreeSurferWiki|top]]
= FreeSurfer File Formats =
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz,...
- CorticalParcellation_DU15NET . . . 7 matches
- ...bral network organization. To access the DU15NET atlases - please click on [[https://freesurfer.net/fswiki/CorticalParcellation_DU15NET?action=AttachFile&do=get&target=DU15NET.zip|...