Full Text Search: "linkto:"FreeSurfer""

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FreeviewGuide/FreeviewTools/VoxelEdit . . . 4 matches: ...his tool allows you to add voxels of a specified value corresponding to those in the FreeSurfer Lookup table (LUT). This is probably the most common voxel edit tool which you will...
Entorhinal . . . 4 matches: ...een correlated with dementia. Please note that there two entorhinal labels exist in FreeSurfer 1) the EC label included in the aparc atlas and 2) the cytoarchitecturally-defined e...
EasyReg . . . 4 matches: ...= EasyReg = '''''This functionality is available in FreeSurfer 7.4 ''''' < > < > < > ''Author: Juan Eugenio Iglesias'' < > ''E-mail: jiglesiasgonzalez [at] mgh.harva...
Contributors . . . 4 matches: ...The FreeSurfer development team would like to acknowledge the following investigators who contributed resources to the development of FreeSurfer: * BruceRosen * MarilynAlbert * ...
AllenBrainAtlas . . . 4 matches: ...= Allen Brain Atlas - human data = In the following you can find FreeSurfer recons constructed with v5.3 and soon also v6 of six (H0351.1009 ,H0351.1012 ,H0351.1015 ,H0351.1016 ,H0...
spmregister-sess . . . 3 matches: ...ory (bold)|| || -run <RRR> || register to run RRR|| || -fsvol <volid> || FreeSurfer vol id (default is brain)|| || -regfile <file> || Save reg as file instead of reg...
mris_ca_train . . . 3 matches: ...uctures (and their colors), then you should create a new file in the same format as $FREESURFER_HOME/FreeSurferColorLUT.txt and select '''File->Lable->Load Color Table'''. The '''...
mri_tessellate . . . 3 matches: ...ically ?h.orig || = Description = Note: the meaning of the labels can be found in $FREESURFER_HOME/FreeSurferColorLUT.txt = Examples = == Example 1 == mri_tessellate $SUBJECTS_D...
mri_mask . . . 3 matches: ... Transfers white matter edits from a wm.mgz volume created with an older version of FreeSurfer to a wm.mgz created with a more recent version of FreeSurfer. The command should be...
mri_make_bem_surfaces . . . 3 matches: ... the brain and FLASH 5° volumes the three surfaces. The tool itself has been kept in FreeSurfer to assist MEEG users generate good forward models; however, it is not updated or act...
mri_cvs_register . . . 3 matches: ...1 --template arg2 = Arguments = == Required Flagged Arguments == ||--mov subjid || !FreeSurfer subject name as found in $SUBJECTS_DIR. This identifies the subject that is to be mo...
mri_coreg . . . 3 matches: ... two volumes in a way that should more-or-less replicate spm_coreg as called by the !FreeSurfer program spmregister. = Synopsis = mri_coreg --mov <movvol> --ref <refvol> --reg reg...
ScubaGuide/Transforms . . . 3 matches: ... is centimeters; (0,0,1) is 1cm 'above' (superior) to the origin. Tkmedit and other FreeSurfer tools, on the other hand, usually view all data in reference to a single volume. Whe...
ResearchTechnologist . . . 3 matches: ...ata processing) 1. Process and quality check (then fix) in vivo MRI data using the FreeSurfer software package * Candidate must: * have a sound degree of computer literacy ...
PairedAnalysis . . . 3 matches: ...''Author: Doug Greve'' This document describes how to perform a paired analysis in FreeSurfer. This includes a two time-point longitudinal analysis in which the same subject was s...
LinuxBoxUbuntuMint2013Report . . . 3 matches: ...= Report: Linux box for FreeSurfer, using Mint 15 (Ubuntu 13) = == Overview == I recently built a new desktop machine with some concern for being able to run FreeSurfer well on it....
HBM . . . 3 matches: ...4 ||Mon ||13:00 - 15:30 ||Automatic segmentation of ex-vivo MRI images using CVS in FreeSurfer || ||Doug Greve ||617 ||Tue ||13:15 - 15:45 ||Automatic Surface-based Interhemispher...
GroupAverageSurface . . . 3 matches: ...his page documents some of the issues involved with measuring areas and distances on FreeSurfer group average surfaces, including the Dec08 Surface Cluster Bug. Group average surf...
GradientUnwarping . . . 3 matches: ..._unwarp tool and tables]] Within the NMR Center, these are located here: {{{/space/freesurfer/unwarp}}} They are no longer distributed with the FreeSurfer package local to the c...
FsmData . . . 3 matches: ...'''FreeSurfer Maintenance (FSM) Grant Data Release''' <<TableOfContents>> == Introduction == The NIH awared the FreeSurfer Maintenance (FSM) Grant (R01EB023281) to support the ...
FsFastUnpackData . . . 3 matches: ...t of the dcmunpack arguments list. Runs 8 and 9 are anatomicals which can be used in FreeSurfer processing; they will be stored in targetdir/3danat/008/001.mgz and 009/001.mgz (thi...
FsFastTutorialV6.0/StudyAnswers . . . 3 matches: ...ich stimulus was presented when). <<Anchor(LinkToFsAnat)>> == How is the functional FreeSurfer analysis linked to the antomical FreeSurfer analysis? == The link between the funct...
FsFastTutorialV5.1/StudyAnswers . . . 3 matches: ...ich stimulus was presented when). <<Anchor(LinkToFsAnat)>> == How is the functional FreeSurfer analysis linked to the antomical FreeSurfer analysis? == The link between the funct...
FsFastFunctionalConnectivityWalkthroughSplittingSeeds . . . 3 matches: ...nctionalConnectivityWalkthrough ]] page. This page will outline how to split a full FreeSurfer aparc ROI into multiple seeds to use a portion of the full Freesurfer parcellation (...
ConcatenateSubregionsResults . . . 3 matches: ...an directly contacting the authosr, please post your questions on this module to the FreeSurfer mailing list at freesurfer [at] nmr.mgh.harvard.edu'' < > < > === 1. Motivati...