Results 26 - 50 of 362 results out of about 3772 pages. (1.16 seconds)
- FsTutorial/AnatomicalROI_tktools . . . 25 matches
- ... are the commands that you need to run before getting started:
{{{
tcsh
source your_freesurfer_dir/SetUpFreeSurfer.csh
setenv SUBJECTS_DIR $TUTORIAL_DATA/buckner_data/tutorial_sub...
- ReleaseNotes . . . 24 matches
- ...
= FreeSurfer Release Notes =
These Release Notes cover what's new in a release, and known issues. See [[DownloadAndInstall|the download and install page]] for the current stable r...
- HippocampalSubfieldsAndNucleiOfAmygdala . . . 24 matches
- ...han directly contacting the author, please post your questions on this module to the FreeSurfer mailing list at freesurfer [at] nmr.mgh.harvard.edu''
If you use these tools in you...
- CorticalParcellation_Yeo2011 . . . 24 matches
- ...[[FreeSurferWiki|top]]
= Cortical Parcellation Estimated by Intrinsic Functional Connectivity =
Data from 1000 young, healthy adults were registered using surface-based alignment....
- HippocampalSubfields . . . 23 matches
- ...sion of this module, which also segments the nuclei of the amygdala, can be found in FreeSurfer 7. ==
'''See HippocampalSubfieldsAndNucleiOfAmygdala for the functionality found in ...
- HypothalamicSubunits . . . 22 matches
- ...nctionality is available in [[https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|FreeSurfer 7.2]].'''''
<<BR>>
<<BR>>
''Author: Benjamin Billot''
<<BR>>
''E-mail: benjamin.bi...
- ThalamicNucleiDTI . . . 20 matches
- ...E FOR THE CNN WHICH HAS BEEN VALIDATED AGAINST ADDITIONAL DATASETS. IF YOU ARE USING FREESURFER 7.4, 7.4.1 OR A DEV VERSION COMPILED BEFORE 3RD JUN 2023 YOU MAY DOWNLOAD THE NEW MO...
- ReconAllDevTable . . . 20 matches
- ...
== FreeSurfer Tutorial: Process Flow ==
This table shows the recon-all steps for the current '''dev''' version of FreeSurfer [[ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer...
- FsTutorial/AnatomicalROIV6.0 . . . 20 matches
- ...rial gives a brief introduction to anatomical ROI analysis, including understanding !FreeSurfer label files, extracting ROI measures from label files, and creating individual and g...
- ScLimbic . . . 19 matches
- ...ic in two ways. One is to download the [[https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev|development version of FreeSurfer]] or you can download a [[https://surfer.nmr.m...
- ReconAllStableTablev4 . . . 19 matches
- ...
== FreeSurfer Tutorial: Process Flow ==
This table shows the recon-all steps for the latest '''stable''' version of FreeSurfer, '''v4.0.2'''. See ReconAllDevTable for the dev ver...
- BrainstemSubstructures . . . 19 matches
- ...han directly contacting the author, please post your questions on this module to the FreeSurfer mailing list at freesurfer [at] nmr.mgh.harvard.edu''
If you use these tools in you...
- dev7beta1 . . . 18 matches
- ...= FreeSurfer Version 7 Release =
This page describes the version 7.0.0 release of FreeSurfer. Below are tarballs and RPMs that you can download and install.
[[https://surfer.nmr.m...
- ReconAllTableStableV5.3 . . . 18 matches
- ...
== FreeSurfer Tutorial: Process Flow ==
This table shows the recon-all steps for stable version 5.3 of FreeSurfer.
See also the OtherUsefulFlags for other recon-all options.
||...
- ReconAllTableStableV5.1 . . . 18 matches
- ...
== FreeSurfer Tutorial: Process Flow ==
This table shows the recon-all steps for stable version 5.1 of FreeSurfer.
See also the OtherUsefulFlags for other recon-all options.
||''...
- ReconAllTableStableV5 . . . 18 matches
- ...
== FreeSurfer Tutorial: Process Flow ==
This table shows the recon-all steps for version 5.0 of FreeSurfer. See ReconAllDevTable for the most current development-code process flow...
- FsTutorial/OverlayFeatStatisticalMaps . . . 18 matches
- ... to course page]]<<BR>>[[https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/FslFeatFreeSurfer|FslFeat Tutorial Homepage]]
----
= Overlaying FSL Feat statistical maps =
== Prepar...
- FsFastTutorialV4.5 . . . 18 matches
- ...
[[FreeSurferWiki|top]] | [[Tutorials|previous]]
= NOTE:this tutorial only works with version 4.5 (not the current version) =
----
[[FsFastTutorialV5.1|Here is the new tutorial f...
- FsTutorial/GroupAnalysis . . . 17 matches
- ...e are the commands that you need to run before getting started:
{{{
## bash
<source_freesurfer>
export TUTORIAL_DATA=<path_to_your_tutorial_data>
export SUBJECTS_DIR=$TUTORIAL_DAT...
- DevelopersGuide . . . 17 matches
- ...
= FreeSurfer Dev Guide =
* Visit the BuildGuide for instructions on building and installing freesurfer manually.
* Visit the GitHub page for an introduction to the github work...
- recon-all . . . 16 matches
- ...Index''' <<TableOfContents>>
= Name =
recon-all : Performs all, or any part of, the FreeSurfer cortical reconstruction process.
= Synopsis =
||recon-all ||-subjid subjid [Directi...
- FsTutorial/PracticeV6.0 . . . 16 matches
- ...es. These are the commands that you need to run before getting started:
{{{
<source_freesurfer>
export TUTORIAL_DATA=<path_to_your_tutorial_data>
export SUBJECTS_DIR=$TUTORIAL_DAT...
- FsTutorial/Practice . . . 16 matches
- ...es. These are the commands that you need to run before getting started:
{{{
<source_freesurfer>
export TUTORIAL_DATA=<path_to_your_tutorial_data>
export SUBJECTS_DIR=$TUTORIAL_DAT...
- FsTutorial/Brazil2009CourseSchedule . . . 16 matches
- ...
== FreeSurfer Tutorial and Workshop in São Paulo, Brazil ==
=== 11 & 12 March 2009 ===
The FreeSurfer Development Team is hosting a two-day course for beginner and experienced u...
- recon-all-clinical . . . 15 matches
- ...= recon-all-clinical =
'''''[WARNING: the script in FreeSurfer 7.4 has a small bug when computing the surface label files at the end of the script. Please replace $FREESURFER_HOM...