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FsTutorial/AnatomicalROI_tktools . . . 25 matches
... are the commands that you need to run before getting started: {{{ tcsh source your_freesurfer_dir/SetUpFreeSurfer.csh setenv SUBJECTS_DIR $TUTORIAL_DATA/buckner_data/tutorial_sub...

20.0k - rev: 97 (current) last modified: 2013-11-01 14:32:41

ReleaseNotes . . . 24 matches
... = FreeSurfer Release Notes = These Release Notes cover what's new in a release, and known issues. See [[DownloadAndInstall|the download and install page]] for the current stable r...

29.1k - rev: 650 (current) last modified: 2024-01-12 12:57:50

HippocampalSubfieldsAndNucleiOfAmygdala . . . 24 matches
...han directly contacting the author, please post your questions on this module to the FreeSurfer mailing list at freesurfer [at] nmr.mgh.harvard.edu'' If you use these tools in you...

23.5k - rev: 50 (current) last modified: 2023-11-20 13:20:35

CorticalParcellation_Yeo2011 . . . 24 matches
...[[FreeSurferWiki|top]] = Cortical Parcellation Estimated by Intrinsic Functional Connectivity = Data from 1000 young, healthy adults were registered using surface-based alignment....

9.5k - rev: 59 (current) last modified: 2013-10-14 20:40:25

HippocampalSubfields . . . 23 matches
...sion of this module, which also segments the nuclei of the amygdala, can be found in FreeSurfer 7. == '''See HippocampalSubfieldsAndNucleiOfAmygdala for the functionality found in ...

18.2k - rev: 77 (current) last modified: 2020-05-08 11:57:49

HypothalamicSubunits . . . 22 matches
...nctionality is available in [[https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|FreeSurfer 7.2]].''''' <<BR>> <<BR>> ''Author: Benjamin Billot'' <<BR>> ''E-mail: benjamin.bi...

15.6k - rev: 33 (current) last modified: 2022-03-15 12:55:48

ThalamicNucleiDTI . . . 20 matches
...E FOR THE CNN WHICH HAS BEEN VALIDATED AGAINST ADDITIONAL DATASETS. IF YOU ARE USING FREESURFER 7.4, 7.4.1 OR A DEV VERSION COMPILED BEFORE 3RD JUN 2023 YOU MAY DOWNLOAD THE NEW MO...

10.1k - rev: 28 (current) last modified: 2024-04-17 11:12:21

ReconAllDevTable . . . 20 matches
... == FreeSurfer Tutorial: Process Flow == This table shows the recon-all steps for the current '''dev''' version of FreeSurfer [[ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer...

18.2k - rev: 277 (current) last modified: 2017-02-17 11:53:55

FsTutorial/AnatomicalROIV6.0 . . . 20 matches
...rial gives a brief introduction to anatomical ROI analysis, including understanding !FreeSurfer label files, extracting ROI measures from label files, and creating individual and g...

28.8k - rev: 35 (current) last modified: 2024-04-24 16:58:20

ScLimbic . . . 19 matches
...ic in two ways. One is to download the [[https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev|development version of FreeSurfer]] or you can download a [[https://surfer.nmr.m...

9.7k - rev: 58 (current) last modified: 2021-12-14 17:35:35

ReconAllStableTablev4 . . . 19 matches
... == FreeSurfer Tutorial: Process Flow == This table shows the recon-all steps for the latest '''stable''' version of FreeSurfer, '''v4.0.2'''. See ReconAllDevTable for the dev ver...

15.1k - rev: 8 (current) last modified: 2012-03-26 16:47:44

BrainstemSubstructures . . . 19 matches
...han directly contacting the author, please post your questions on this module to the FreeSurfer mailing list at freesurfer [at] nmr.mgh.harvard.edu'' If you use these tools in you...

9.6k - rev: 48 (current) last modified: 2023-11-20 13:18:20

dev7beta1 . . . 18 matches
...= FreeSurfer Version 7 Release = This page describes the version 7.0.0 release of FreeSurfer. Below are tarballs and RPMs that you can download and install. [[https://surfer.nmr.m...

3.3k - rev: 42 (current) last modified: 2020-04-29 05:07:30

ReconAllTableStableV5.3 . . . 18 matches
... == FreeSurfer Tutorial: Process Flow == This table shows the recon-all steps for stable version 5.3 of FreeSurfer. See also the OtherUsefulFlags for other recon-all options. ||...

13.7k - rev: 3 (current) last modified: 2015-05-08 15:10:28

ReconAllTableStableV5.1 . . . 18 matches
... == FreeSurfer Tutorial: Process Flow == This table shows the recon-all steps for stable version 5.1 of FreeSurfer. See also the OtherUsefulFlags for other recon-all options. ||''...

13.4k - rev: 7 (current) last modified: 2012-03-26 16:45:23

ReconAllTableStableV5 . . . 18 matches
... == FreeSurfer Tutorial: Process Flow == This table shows the recon-all steps for version 5.0 of FreeSurfer. See ReconAllDevTable for the most current development-code process flow...

13.4k - rev: 3 (current) last modified: 2012-03-26 16:47:16

FsTutorial/OverlayFeatStatisticalMaps . . . 18 matches
... to course page]]<<BR>>[[https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/FslFeatFreeSurfer|FslFeat Tutorial Homepage]] ---- = Overlaying FSL Feat statistical maps = == Prepar...

6.5k - rev: 46 (current) last modified: 2021-09-22 11:40:04

FsFastTutorialV4.5 . . . 18 matches
... [[FreeSurferWiki|top]] | [[Tutorials|previous]] = NOTE:this tutorial only works with version 4.5 (not the current version) = ---- [[FsFastTutorialV5.1|Here is the new tutorial f...

46.6k - rev: 103 (current) last modified: 2011-05-19 15:29:07

FsTutorial/GroupAnalysis . . . 17 matches
...e are the commands that you need to run before getting started: {{{ ## bash <source_freesurfer> export TUTORIAL_DATA=<path_to_your_tutorial_data> export SUBJECTS_DIR=$TUTORIAL_DAT...

20.2k - rev: 88 (current) last modified: 2020-11-11 12:26:55

DevelopersGuide . . . 17 matches
... = FreeSurfer Dev Guide = * Visit the BuildGuide for instructions on building and installing freesurfer manually. * Visit the GitHub page for an introduction to the github work...

3.8k - rev: 190 (current) last modified: 2023-09-13 15:46:41

recon-all . . . 16 matches
...Index''' <<TableOfContents>> = Name = recon-all : Performs all, or any part of, the FreeSurfer cortical reconstruction process. = Synopsis = ||recon-all ||-subjid subjid [Directi...

34.9k - rev: 47 (current) last modified: 2017-12-08 18:23:09

FsTutorial/PracticeV6.0 . . . 16 matches
...es. These are the commands that you need to run before getting started: {{{ <source_freesurfer> export TUTORIAL_DATA=<path_to_your_tutorial_data> export SUBJECTS_DIR=$TUTORIAL_DAT...

16.8k - rev: 49 (current) last modified: 2022-08-26 10:32:49

FsTutorial/Practice . . . 16 matches
...es. These are the commands that you need to run before getting started: {{{ <source_freesurfer> export TUTORIAL_DATA=<path_to_your_tutorial_data> export SUBJECTS_DIR=$TUTORIAL_DAT...

16.7k - rev: 2 (current) last modified: 2024-04-24 16:57:41

FsTutorial/Brazil2009CourseSchedule . . . 16 matches
... == FreeSurfer Tutorial and Workshop in São Paulo, Brazil == === 11 & 12 March 2009 === The FreeSurfer Development Team is hosting a two-day course for beginner and experienced u...

4.7k - rev: 1 (current) last modified: 2010-01-08 16:31:27

recon-all-clinical . . . 15 matches
...= recon-all-clinical = '''''[WARNING: the script in FreeSurfer 7.4 has a small bug when computing the surface label files at the end of the script. Please replace $FREESURFER_HOM...

6.0k - rev: 22 (current) last modified: 2023-06-13 10:42:55

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