Full Text Search: "linkto:"FreeSurfer""

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TkMedit . . . 1 match: ...ical data. TkMedit can also display functional data and surfaces as overlays on anatomical data. TkMedit is a tool in the FreeSurfer toolset. See * TkMeditGuide * [[tkmedit]] ...
SusanMosher . . . 1 match: ...ls]]:''' || Many || ||'''Authored:''' || || ||'''WorkFlows used:''' || FreeSurfer, MNE || ||'''Tools used:''' || || || < > || < > || ||''...
ScubaGuide/ScubaWorkingWithData/ScubaControlPoints . . . 1 match: ...ntry will be filled in with the standard {{{control.dat}}} location. You should accept this default location, because this is where other FreeSurfer tools expect to find this file....
ScubaGuide/ScubaIntroduction . . . 1 match: ...cubaGeneralUsage| ScubaGeneralUsage]]|| = Introduction = Scuba is a visualizer for FreeSurfer data. It is intended to replace TkMedit and eventually Tksurfer. It currently suppor...
MorphometryStats . . . 1 match: ...it. This page describes the various global measures of brain volume provided with FreeSurfer as of version 5.2 and later. The calculations are not as simple as just adding up th...
ManualEditing . . . 1 match: ... The purpose of this page is to provide tips and instructions for manual editing of FreeSurfer recons. Transferring Recon Edits How to transfer edits from a case processed in an...
KatyThakkar . . . 1 match: ...''' || || ||'''WorkFlows used:''' || || ||'''Tools used:''' || FsFast, FreeSurfer || || < > || < > || ||'''Email:''' || <<MailTo(ktha...
HowTo/HowTo . . . 1 match: ...e, create and entry for it below. === Tutorials === * BlenderModel - How to Import FreeSurfer Surface into Blender for advanced rendering. * SubmillimeterRecon - How to run reco...
GroupAnalysisOverview . . . 1 match: ...lysis has been done in a standard volume space (i.e., Talairach/MNI152/MNI305). With FreeSurfer, we also have the option to analyze group data in the surface space. Volume-based an...
FsTutorial/Talairach_tktools . . . 1 match: ...wn data, but you will have to substitute your own specific paths and subject names. FreeSurfer computes a linear Talairach transform contained in a 3x4 matrix in a file called tal...
FsTutorial/Talairach_freeview . . . 1 match: ...wn data, but you will have to substitute your own specific paths and subject names. FreeSurfer computes a linear Talairach transform contained in a 3x4 matrix in a file called tal...
FsTutorial/MultiModal_tktools . . . 1 match: ... to get you acquainted with the concepts needed to perform multimodal integration in FreeSurfer by interacting with both fMRI and DTI data. You will not learn how to perform fMRI o...
FsTutorial/MultiModal_freeview . . . 1 match: ... to get you acquainted with the concepts needed to perform multimodal integration in FreeSurfer by interacting with fMRI data. You will not learn how to perform fMRI analysis here;...
FsTutorial/GroupAnalysisDemographics . . . 1 match: ...is|Group Analysis Tutorial]]. <<TableOfContents>> = Demographics = Note that the FreeSurfer subject name is a 3-digit, 0-padded number (eg the name of the 2nd subject is '049')...
FsTutorial/Diffusion/DTIscripts . . . 1 match: ...orial/Diffusion_DtiIntegration|Diffusion and DTI Integration]] || Be sure to source FreeSurfer before trying to run any of the following scripts. === subjects.csh === Use this s...
FsTutorial/AutomaticRegistrationSpm . . . 1 match: ...r === Again, it is important to first be certain that the functional volume and the FreeSurfer structural volume represent the same subject, and that the functional volume exists ...
FsFastTutorialV5.1_freeview . . . 1 match: ...R>> < > This tutorial steps you through the analysis of an fMRI data set with the FreeSurfer Functional Analysis Stream (FSFAST) version 5.1, from organizing the data to group a...
FsFastTutorialV5.1/FsFastGroupLevel_freeview . . . 1 match: ... grouplist.txt : list of the sessions * subjectlist.txt : list of the corresponding FreeSurfer subject IDs * sess.info.txt : other information about each session * workmem.sm05....
FsFastTutorialV5.1/FsFastGroupLevel . . . 1 match: ... grouplist.txt : list of the sessions * subjectlist.txt : list of the corresponding FreeSurfer subject IDs * sess.info.txt : other information about each session * workmem.sm05....
FsFastTutorialV5.1 . . . 1 match: ...se page]] This tutorial steps you through the analysis of an fMRI data set with the FreeSurfer Functional Analysis Stream (FSFAST) version 5.1, from organizing the data to group a...
FsFastTutorialV4.5/400_Get_familiar_with_sessions_format . . . 1 match: ...stinctive directory structure of their own, one that is automatically created in the FreeSurfer reconstruction. '''t1epi:''' This directory contains the t1-weighted EPI image data...
FsFastParametricModulation . . . 1 match: ...is page describes how to perform a Parametric Modulation fMRI analysis in FSFAST for FreeSurfer version 5.0 and higher. Parametric Modulation refers to the modulation of the ampli...
FsFastOverview . . . 1 match: ...stinctive directory structure of their own, one that is automatically created in the FreeSurfer reconstruction. '''t1epi:''' This directory contains the t1-weighted EPI image data...
FsFastGroupAnalysisOverview . . . 1 match: ...lysis has been done in a standard volume space (i.e., Talairach/MNI152/MNI305). With FreeSurfer, we also have the option to analyze group data in the surface space. Volume-based an...
FsFastCreateParadigmFile . . . 1 match: ...Note: this applies to FreeSurfer version 4.5 The paradigm file is a simple text file that describes which stimulus was present when. You will need a separate paradigm file for eac...