Full Text Search: "linkto:"FreeSurfer""

Results 51 - 75 of 362 results out of about 3772 pages. (1.19 seconds)

FsQuizAnswers . . . 14 matches: ...= FreeSurfer Tutorial and Workshop Quiz = '''Discuss the answers to these questions with your partner.''' What is the difference between a volume and a surface? *A volume stores...
tksurfer_labeledit . . . 13 matches: ...leOfContents>> == Version applicability == This page covers features in tksurfer in FreeSurfer 4.0.1 and 4.0.2. Later versions may have updated behaviors. = Overview = This page ...
mri_segstats . . . 13 matches: ...|| || --accumulate || Save mean*nvoxels instead of the mean || || --ctab ctabfile || Freesurfer color table file. Thi s the file used by !FreeSurfer to specify how each segmentatio...
PetSurfer . . . 13 matches: ...nts>> == Introduction == === Overview === PETSurfer provides a set of tools within FreeSurfer for end-to-end integrated MRI-PET analysis, including motion correction, PET-MRI reg...
FsTutorial/RegisterFeatOntoAnatomical . . . 13 matches: ... of all tutorials]]< >[[FsTutorial|Back to course page]]< >[[FsTutorial/FslFeatFreeSurfer|FslFeat Tutorial Homepage]] ---- == Registering FSL Feat output to the anatomical =...
FsTutorial/MultiModalFmriIndividual_tktools . . . 13 matches: ...orial is to get you acquainted with the concepts need to perform fMRI integration in FreeSurfer by interacting with the data from an individual subject. You will not learn how to p...
FsTutorial/MorphAndRecon . . . 13 matches: ...utorial subject names and examples have been updated in the new tutorial. ---- ~+'''FreeSurfer Tutorial: Morphometry and Reconstruction (90 minutes of exercises)'''+~ ---- <<Table...
FsTutorial/LongitudinalTutorial_tktools . . . 13 matches: ...OfContents>>''' == Preparations == Note: The tutorial data has been processed with Freesurfer 5.1. The commands, as described below, to view or post-process the data will work wi...
CoordinateSystems . . . 13 matches: ...[[FreeSurferWiki|top]] = FreeSurfer Coordinate Systems = The "official" FreeSurfer Coordinate definitions can be found in the following power-points slides ('''SEE THESE FIRST'''...
eTIV . . . 12 matches: ...See also: [[Infant_eTIV]]'' Before you get started, you should fully understand how FreeSurfer does and does not compute the *estimate* of the ICV. What it does NOT do is to deter...
OrganizingFSCourse . . . 12 matches: ...== Some initial notes from lessons learned during FreeSurfer course in São Paulo, Brazil 11 & 12 March, 2009 == Note: ''__The opinions expressed here are the views of mine and do n...
MatlabRuntime . . . 12 matches: ...= Matlab Runtime = A few freesurfer modules, like fsfast and the subfield/nuclei segmentation tools, require the matlab runtime package (MCR). The MCR allows users to run distribu...
FsTutorial/TroubleshootingDataV6.0 . . . 12 matches: ...se are the commands that you need to run before getting started: {{{ ## bash export FREESURFER_HOME=/path/to/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.sh export TUTORIAL_...
FsTutorial/BarcelonaSept2017CourseSchedule . . . 12 matches: ...'''Details for the !FreeSurfer Course in Barcelona, Spain, September 5-8 2017''' This course will be held at Universitat Pompeu Fabra in Barcelona < > Address: Universitat Pom...
Samseg . . . 11 matches: ...nctionality is available in [[https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|FreeSurfer 7.2]], with gradual improvements appearing in the development version.''''' ''Autho...
OtherUsefulFlags . . . 11 matches: ... == FreeSurfer Tutorial: Useful recon-all flags. == This page extends ReconAllDevTable. The following flags can be used in conjunction with individual steps or the entire proces...
MEF . . . 11 matches: ...data (multiple-volumes for a single subject) makes it harder for the data analysis. FreeSurfer is not optimized for the processing of MEF data yet, and this page describes some po...
LongitudinalHippocampalSubfields . . . 11 matches: ...sion of this module, which also segments the nuclei of the amygdala, can be found in FreeSurfer 7. == '''See [[HippocampalSubfieldsAndNucleiOfAmygdala]] for the functionality found...
FsTutorial/Scripts . . . 11 matches: ...<<TableOfContents>> == FreeSurfer Scripts == === Aliases === If you find yourself typing the same commands over and over, a nice shortcut is to make an alias for it. An alias is a...
DevelopersGuide/QtDevelopersGuide . . . 11 matches: ...ents(4)>> This page is targeted at those who want to develop Qt applications in the FreeSurfer code tree. === Usual Workflow of Qt Developers === If you are new to Qt programmi...
CorticalParcellation . . . 11 matches: ...[[FreeSurferWiki|top]] = Cortical Parcellation = The FreeSurfer utilities [[mris_ca_train]] and [[mris_ca_label]] together implement a technique for automatically assigning a neur...
BuildYourOwnMonteCarlo . . . 10 matches: ...FreeSurfer offers several ways to correct for multiple comparisons on the surface. One way is similar to Gaussian Random Fields (GRF) but uses a simulation rather than analitic equ...
SurfaceRegAndTemplates . . . 9 matches: ...s>> = Overview = This page provides an overview of two related topics: * How the !FreeSurfer pipeline registers the surfaces of individual subjects to an "average" reference sur...
LongitudinalProcessing45 . . . 9 matches: ...itudinal Stream (FS 4.5 and 5.0) = '''WARNING:''' < > The longitudinal stream in FreeSurfer 5.0 (distribution package) is broken!< > PLEASE LOAD FIXED BINARIES (links here: ...
FsTutorial/MulitModalFmriIndividual . . . 9 matches: ...orial is to get you acquainted with the concepts need to perform fMRI integration in FreeSurfer by interacting with the data from an individual subject. You will not learn how to p...