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| * Brik2Bfloat brik2bfloat * MincToBshort minc_to_bshort * MkXsubjReg mkxsubjreg * MriAddXformToHeader mri_add_xform_to_header * MriAnnotation2Label mri_annotation2label * MriAverage mri_average * MriCaLabel mri_ca_label * MriCaNormalize mri_ca_normalize * MriCaRegister mri_ca_register * MriCaTrain mri_ca_train * MriConvert mri_convert * MriConvertMdh mri_convert_mdh * MriCor2Label mri_cor2label * MriEmRegister mri_em_register * MriFill mri_fill * MriGdfGlm mri_gdfglm * MriHead mri_head * MriInfo mri_info * MriLabel2Label mri_label2label * MriLabelVolume mri_label_volume * MriLinearRegister mri_linear_register * MriMakeRegister mri_make_register * MriMakeTemplate mri_make_template * MriMatrixMultiple mri_matrix_multiply * MriMsFitParms mri_ms_fitparms * MriNormalize mri_normalize * MriParseSdcmDir mri_parse_sdcmdir * MriPartialRibbon mri_partial_ribbon * MriProbdeDicom mri_probedicom * MriProbeIma mri_probe_ima * MriRegister mri_register * MriRelabelHypointensities mri_relabel_hypointensities * MriRigidRegister mri_rigid_register * MriSegHead mri_seghead * MriSegment mri_segment * MriStripSkull mri_strip_skull * MriSurf2Surf mri_surf2surf * MriSurf2Vol mri_surf2vol * MriSurfCluster mri_surfcluster * MriTessellate mri_tessellate * MriVol2Roi mri_vol2roi * MriVol2Surf mri_vol2surf * MriVolCluster mri_volcluster * MriVolSynth mri_volsynth * MriWmFilter mri_wmfilter * MriWatershed mri_watershed * MriXvolAvg mri_xvolavg * Mris2Rgb mris2rgb * MrisAnatomicalStats mris_anatomical_stats * MrisAverageCurvature mris_average_curvature * MrisCaLabel mris_ca_label * MrisCaTrain mris_ca_train * MrisConvert mris_convert * MrisCurvature mris_curvature * MrisEulerNumber mris_euler_number * MrisFindFlatRegions mris_find_flat_regions * MrisFixTopology mris_fix_topology * MrisFlatten mris_flatten * MrisGlm mris_glm * MrisInflate mris_inflate * MrisMakeAvergeSurface mris_make_average_surface * MrisMakeSurfaces mris_make_surfaces * MrisMakeTemplate mris_make_template * MrisRegister mris_register * MrisSmooth mris_smooth * MrisSphere mris_sphere * MrisSphericalAverage mris_spherical_average * MrisThickness mris_thickness * MrisTwoClass mris_twoclass * MrispPaint mrisp_paint * MriSynthesize mri_synthesize * NMovie nmovie * OptSeq2 optseq2 * Paint paint * Spm2Bfloat spm2bfloat * StatCombine statcombine * StatNormalize stat_normalize * VssDump vss-dump |
#pragma section-numbers on = Index = [[Navigation(children)]] [[TableOfContents]] [[Anchor(Volume)]] = Volume = [[Anchor(VolumeConversion)]] == VolumeConversion == ["mri_convert"] [[BR]] ["brik2bfloat"] [[BR]] ["minc_to_bshort"] [[BR]] ["mri_annotation2label"] [[BR]] ["mri_convert_mdh"] [[BR]] ["mri_cor2label"] [[BR]] ["mri_label2label"] [[BR]] ["mri_surf2surf"] [[BR]] ["mri_surf2vol"] [[BR]] ["mri_vol2roi"] [[BR]] ["mri_vol2surf"] [[BR]] ["mri_volcluster"] [[BR]] ["spm2bfloat"] [[BR]] [[Anchor(MotionCorrection)]] == MotionCorrection == ["mri_motion_correct"] [[BR]] [[Anchor(Talairach)]] == Talairach == ["talairach"] [[BR]] [[Anchor(Registration)]] == Registration == ["mri_ca_register"] [[BR]] ["mri_register"] [[BR]] ["mri_rigid_register"] [[BR]] ["mri_linear_register"] [[BR]] [[Anchor(IntensityNormalization)]] == IntensityNormalization == ["mri_normalize"] [[BR]] [[Anchor(SkullStripping)]] == SkullStripping == ["mri_watershed"] [[Anchor(Segmentation)]] == Segmentation == ["mri_segment"] [[BR]] [[Anchor(VolumeMisc)]] == VolumeMisc == ["mkxsubjreg"] [[BR]] ["mri_add_xform_to_header"] [[BR]] ["mri_average"] [[BR]] ["mri_ca_label"] [[BR]] ["mri_ca_normalize"] [[BR]] ["mri_ca_train"] [[BR]] ["mri_em_register"] [[BR]] ["mri_fill"] [[BR]] ["mri_gdfglm"] [[BR]] ["mri_head"] [[BR]] ["mri_info"] [[BR]] ["mri_label_volume"] [[BR]] ["mri_make_register"] [[BR]] ["mri_make_template"] [[BR]] ["mri_matrix_multiply"] [[BR]] ["mri_ms_fitparms"] [[BR]] ["mri_parse_sdcmdir"] [[BR]] ["mri_partial_ribbon"] [[BR]] ["mri_probedicom"] [[BR]] ["mri_probe_ima"] [[BR]] ["mri_relabel_hypointensities"] [[BR]] ["mri_seghead"] [[BR]] ["mri_strip_skull"] [[BR]] ["mri_surfcluster"] [[BR]] ["mri_tessellate"] [[BR]] ["mri_volsynth"] [[BR]] ["mri_wmfilter"] [[BR]] ["mri_watershed"] [[BR]] ["mri_xvolavg"] [[BR]] [[Anchor(Surface)]] = Surface = [[Anchor(SurfaceGeneration)]] == SurfaceGeneration == ["mri_tessellate"] [[BR]] [[Anchor(Smoothing)]] == Smoothing == ["mris_smooth"] [[BR]] [[Anchor(Inflation)]] == Inflation == ["mris_inflate"] [[BR]] [[Anchor(TopologyFixing)]] == TopologyFixing == ["mris_fix_topology"] [[BR]] [[Anchor(InterSubjectMorphing)]] == InterSubjectMorphing == ["mris_sphere"] [[BR]] ["mris_register"] [[BR]] [[Anchor(FinalSurfaceGeneration)]] == FinalSurfaceGeneration == ["mris_make_surfaces"] [[BR]] [[Anchor(Parcellation)]] == Parcellation == ["mris_ca_label"] [[BR]] ["mris_ca_train"] [[BR]] [[Anchor(Flattening)]] == Flattening == ["mris_flatten"] [[BR]] [[Anchor(SurfaceMisc)]] == SurfaceMisc == ["mris2rgb"] [[BR]] ["mris_anatomical_stats"] [[BR]] ["mris_average_curvature"] [[BR]] ["mris_convert"] [[BR]] ["mris_curvature"] [[BR]] ["mris_euler_number"] [[BR]] ["mris_find_flat_regions"] [[BR]] ["mris_glm"] [[BR]] ["mris_make_average_surface"] [[BR]] ["mris_make_template"] [[BR]] ["mris_spherical_average"] [[BR]] ["mris_thickness"] [[BR]] ["mris_twoclass"] [[BR]] ["mrisp_paint"] [[BR]] ["mri_synthesize"] [[BR]] ["nmovie"] [[BR]] ["optseq2"] [[BR]] ["paint"] [[BR]] ["stat_normalize"] [[BR]] ["vss-dump"] [[BR]] |
1. Index
Navigation(children) TableOfContents
2. Volume
2.1. VolumeConversion
["mri_convert"] BR ["brik2bfloat"] BR ["minc_to_bshort"] BR ["mri_annotation2label"] BR ["mri_convert_mdh"] BR ["mri_cor2label"] BR ["mri_label2label"] BR ["mri_surf2surf"] BR ["mri_surf2vol"] BR ["mri_vol2roi"] BR ["mri_vol2surf"] BR ["mri_volcluster"] BR ["spm2bfloat"] BR
2.2. MotionCorrection
["mri_motion_correct"] BR
2.3. Talairach
["talairach"] BR
2.4. Registration
["mri_ca_register"] BR ["mri_register"] BR ["mri_rigid_register"] BR ["mri_linear_register"] BR
Anchor(IntensityNormalization)
2.5. IntensityNormalization
["mri_normalize"] BR
2.6. SkullStripping
["mri_watershed"]
2.7. Segmentation
["mri_segment"] BR
2.8. VolumeMisc
["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_watershed"] BR ["mri_xvolavg"] BR
3. Surface
3.1. SurfaceGeneration
["mri_tessellate"] BR
3.2. Smoothing
["mris_smooth"] BR
3.3. Inflation
["mris_inflate"] BR
3.4. TopologyFixing
["mris_fix_topology"] BR
3.5. InterSubjectMorphing
["mris_sphere"] BR ["mris_register"] BR
Anchor(FinalSurfaceGeneration)
3.6. FinalSurfaceGeneration
["mris_make_surfaces"] BR
3.7. Parcellation
["mris_ca_label"] BR ["mris_ca_train"] BR
3.8. Flattening
["mris_flatten"] BR
3.9. SurfaceMisc
["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR