Differences between revisions 1 and 18 (spanning 17 versions)
Revision 1 as of 2004-07-23 21:34:51
Size: 2601
Editor: DavidTuch
Comment:
Revision 18 as of 2005-08-05 14:19:38
Size: 1064
Comment: added recon-all link
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
  * Brik2Bfloat brik2bfloat
  * MincToBshort minc_to_bshort
  * MkXsubjReg mkxsubjreg
  * MriAddXformToHeader mri_add_xform_to_header
  * MriAnnotation2Label mri_annotation2label
  * MriAverage mri_average
  * MriCaLabel mri_ca_label
  * MriCaNormalize mri_ca_normalize
  * MriCaRegister mri_ca_register
  * MriCaTrain mri_ca_train
  * MriConvert mri_convert
  * MriConvertMdh mri_convert_mdh
  * MriCor2Label mri_cor2label
  * MriEmRegister mri_em_register
  * MriFill mri_fill
  * MriGdfGlm mri_gdfglm
  * MriHead mri_head
  * MriInfo mri_info
  * MriLabel2Label mri_label2label
  * MriLabelVolume mri_label_volume
  * MriLinearRegister mri_linear_register
  * MriMakeRegister mri_make_register
  * MriMakeTemplate mri_make_template
  * MriMatrixMultiple mri_matrix_multiply
  * MriMsFitParms mri_ms_fitparms
  * MriNormalize mri_normalize
  * MriParseSdcmDir mri_parse_sdcmdir
  * MriPartialRibbon mri_partial_ribbon
  * MriProbdeDicom mri_probedicom
  * MriProbeIma mri_probe_ima
  * MriRegister mri_register
  * MriRelabelHypointensities mri_relabel_hypointensities
  * MriRigidRegister mri_rigid_register
  * MriSegHead mri_seghead
  * MriSegment mri_segment
  * MriStripSkull mri_strip_skull
  * MriSurf2Surf mri_surf2surf
  * MriSurf2Vol mri_surf2vol
  * MriSurfCluster mri_surfcluster
  * MriTessellate mri_tessellate
  * MriVol2Roi mri_vol2roi
  * MriVol2Surf mri_vol2surf
  * MriVolCluster mri_volcluster
  * MriVolSynth mri_volsynth
  * MriWmFilter mri_wmfilter
  * MriWatershed mri_watershed
  * MriXvolAvg mri_xvolavg
  * Mris2Rgb mris2rgb
  * MrisAnatomicalStats mris_anatomical_stats
  * MrisAverageCurvature mris_average_curvature
  * MrisCaLabel mris_ca_label
  * MrisCaTrain mris_ca_train
  * MrisConvert mris_convert
  * MrisCurvature mris_curvature
  * MrisEulerNumber mris_euler_number
  * MrisFindFlatRegions mris_find_flat_regions
  * MrisFixTopology mris_fix_topology
  * MrisFlatten mris_flatten
  * MrisGlm mris_glm
  * MrisInflate mris_inflate
  * MrisMakeAvergeSurface mris_make_average_surface
  * MrisMakeSurfaces mris_make_surfaces
  * MrisMakeTemplate mris_make_template
  * MrisRegister mris_register
  * MrisSmooth mris_smooth
  * MrisSphere mris_sphere
  * MrisSphericalAverage mris_spherical_average
  * MrisThickness mris_thickness
  * MrisTwoClass mris_twoclass
  * MrispPaint mrisp_paint
  * MriSynthesize mri_synthesize
  * NMovie nmovie
  * OptSeq2 optseq2
  * Paint paint
  * Spm2Bfloat spm2bfloat
  * StatCombine statcombine
  * StatNormalize stat_normalize
  * VssDump vss-dump
#pragma section-numbers on

[[Include(Blank, "Recon-all", 4)]]
 * ["recon-all"]

[[Include(Blank, "Volume", 4)]]
 [[Include(FreeSurferCommandsVolumeConversion, , 5)]]
 [[Include(FreeSurferCommandsMotionCorrection, , 5)]]
 [[Include(FreeSurferCommandsTalairach, ,5)]]
 [[Include(FreeSurferCommandsRegistration, ,5)]]
 [[Include(FreeSurferCommandsIntensityNormalization, ,5)]]
 [[Include(FreeSurferCommandsSkullStripping, ,5)]]
 [[Include(FreeSurferCommandsSegmentation, ,5)]]
 [[Include(FreeSurferCommandsVolumeMisc, ,5)]]

[[Include(Blank, "Surface", 4)]]
 [[Include(FreeSurferCommandsSurfaceGeneration, ,5)]]
 [[Include(FreeSurferCommandsSurfaceSmoothing, ,5)]]
 [[Include(FreeSurferCommandsSurfaceInflation, ,5)]]
 [[Include(FreeSurferCommandsTopologyFixing, ,5)]]
 [[Include(FreeSurferCommandsInterSubjectMorphing, ,5)]]
 [[Include(FreeSurferCommandsFinalSurfaceGeneration, ,5)]]
 [[Include(FreeSurferCommandsSurfaceParcellation, ,5)]]
 [[Include(FreeSurferCommandsFlattening, ,5)]]
 [[Include(FreeSurferCommandsSurfaceMisc, ,5)]]

FreeSurferCommands (last edited 2011-09-19 15:19:48 by MartinReuter)