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| [[Navigation(children)]] | [[Include(Blank, "Recon-all", 4)]] * ["recon-all"] |
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| '''Index''' | [[Include(Blank, "Volume", 4)]] [[Include(FreeSurferCommandsVolumeConversion, , 5)]] [[Include(FreeSurferCommandsMotionCorrection, , 5)]] [[Include(FreeSurferCommandsTalairach, ,5)]] [[Include(FreeSurferCommandsRegistration, ,5)]] [[Include(FreeSurferCommandsIntensityNormalization, ,5)]] [[Include(FreeSurferCommandsSkullStripping, ,5)]] [[Include(FreeSurferCommandsSegmentation, ,5)]] [[Include(FreeSurferCommandsVolumeMisc, ,5)]] |
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| [[TableOfContents]] [[Anchor(Volume)]] = Volume = [[Anchor(VolumeConversion)]] == VolumeConversion == ["mri_convert"] [[BR]] ["brik2bfloat"] [[BR]] ["minc_to_bshort"] [[BR]] ["mri_annotation2label"] [[BR]] ["mri_convert_mdh"] [[BR]] ["mri_cor2label"] [[BR]] ["mri_label2label"] [[BR]] ["mri_label2vol"] [[BR]] ["mri_surf2surf"] [[BR]] ["mri_surf2vol"] [[BR]] ["mri_vol2roi"] [[BR]] ["mri_vol2surf"] [[BR]] ["mri_volcluster"] [[BR]] ["spm2bfloat"] [[BR]] [[Anchor(MotionCorrection)]] == MotionCorrection == ["mri_motion_correct"] [[BR]] [[Anchor(Talairach)]] == Talairach == ["talairach"] [[BR]] ["talairach_mgh"] [[BR]] [[Anchor(Registration)]] == Registration == ["mri_ca_register"] [[BR]] ["mri_register"] [[BR]] ["mri_rigid_register"] [[BR]] ["mri_linear_register"] [[BR]] [[Anchor(IntensityNormalization)]] == IntensityNormalization == ["mri_normalize"] [[BR]] [[Anchor(SkullStripping)]] == SkullStripping == ["mri_watershed"] [[Anchor(Segmentation)]] == Segmentation == ["mri_segment"] [[BR]] [[Anchor(VolumeMisc)]] == VolumeMisc == ["mkxsubjreg"] [[BR]] ["mri_add_xform_to_header"] [[BR]] ["mri_average"] [[BR]] ["mri_ca_label"] [[BR]] ["mri_ca_normalize"] [[BR]] ["mri_ca_train"] [[BR]] ["mri_em_register"] [[BR]] ["mri_fill"] [[BR]] ["mri_gdfglm"] [[BR]] ["mri_head"] [[BR]] ["mri_info"] [[BR]] ["mri_label_volume"] [[BR]] ["mri_make_register"] [[BR]] ["mri_make_template"] [[BR]] ["mri_matrix_multiply"] [[BR]] ["mri_ms_fitparms"] [[BR]] ["mri_parse_sdcmdir"] [[BR]] ["mri_partial_ribbon"] [[BR]] ["mri_probedicom"] [[BR]] ["mri_probe_ima"] [[BR]] ["mri_relabel_hypointensities"] [[BR]] ["mri_seghead"] [[BR]] ["mri_strip_skull"] [[BR]] ["mri_surfcluster"] [[BR]] ["mri_tessellate"] [[BR]] ["mri_volsynth"] [[BR]] ["mri_wmfilter"] [[BR]] ["mri_watershed"] [[BR]] ["mri_xvolavg"] [[BR]] [[Anchor(Surface)]] = Surface = [[Anchor(SurfaceGeneration)]] == SurfaceGeneration == ["mri_tessellate"] [[BR]] [[Anchor(Smoothing)]] == Smoothing == ["mris_smooth"] [[BR]] [[Anchor(Inflation)]] == Inflation == ["mris_inflate"] [[BR]] [[Anchor(TopologyFixing)]] == TopologyFixing == ["mris_fix_topology"] [[BR]] [[Anchor(InterSubjectMorphing)]] == InterSubjectMorphing == ["mris_sphere"] [[BR]] ["mris_register"] [[BR]] [[Anchor(FinalSurfaceGeneration)]] == FinalSurfaceGeneration == ["mris_make_surfaces"] [[BR]] [[Anchor(Parcellation)]] == Parcellation == ["mris_ca_label"] [[BR]] ["mris_ca_train"] [[BR]] [[Anchor(Flattening)]] == Flattening == ["mris_flatten"] [[BR]] [[Anchor(SurfaceMisc)]] == SurfaceMisc == ["mris2rgb"] [[BR]] ["mris_anatomical_stats"] [[BR]] ["mris_average_curvature"] [[BR]] ["mris_convert"] [[BR]] ["mris_curvature"] [[BR]] ["mris_euler_number"] [[BR]] ["mris_find_flat_regions"] [[BR]] ["mris_glm"] [[BR]] ["mris_make_average_surface"] [[BR]] ["mris_make_template"] [[BR]] ["mris_spherical_average"] [[BR]] ["mris_thickness"] [[BR]] ["mris_twoclass"] [[BR]] ["mrisp_paint"] [[BR]] ["mri_synthesize"] [[BR]] ["nmovie"] [[BR]] ["optseq2"] [[BR]] ["paint"] [[BR]] ["stat_normalize"] [[BR]] ["vss-dump"] [[BR]] |
[[Include(Blank, "Surface", 4)]] [[Include(FreeSurferCommandsSurfaceGeneration, ,5)]] [[Include(FreeSurferCommandsSurfaceSmoothing, ,5)]] [[Include(FreeSurferCommandsSurfaceInflation, ,5)]] [[Include(FreeSurferCommandsTopologyFixing, ,5)]] [[Include(FreeSurferCommandsInterSubjectMorphing, ,5)]] [[Include(FreeSurferCommandsFinalSurfaceGeneration, ,5)]] [[Include(FreeSurferCommandsSurfaceParcellation, ,5)]] [[Include(FreeSurferCommandsFlattening, ,5)]] [[Include(FreeSurferCommandsSurfaceMisc, ,5)]] |
Include(Blank, "Recon-all", 4)
- ["recon-all"]
Include(FreeSurferCommandsVolumeConversion, , 5) Include(FreeSurferCommandsMotionCorrection, , 5) Include(FreeSurferCommandsTalairach, ,5) Include(FreeSurferCommandsRegistration, ,5) Include(FreeSurferCommandsIntensityNormalization, ,5) Include(FreeSurferCommandsSkullStripping, ,5) Include(FreeSurferCommandsSegmentation, ,5) Include(FreeSurferCommandsVolumeMisc, ,5)
Include(FreeSurferCommandsSurfaceGeneration, ,5) Include(FreeSurferCommandsSurfaceSmoothing, ,5) Include(FreeSurferCommandsSurfaceInflation, ,5) Include(FreeSurferCommandsTopologyFixing, ,5) Include(FreeSurferCommandsInterSubjectMorphing, ,5) Include(FreeSurferCommandsFinalSurfaceGeneration, ,5) Include(FreeSurferCommandsSurfaceParcellation, ,5) Include(FreeSurferCommandsFlattening, ,5) Include(FreeSurferCommandsSurfaceMisc, ,5)