| Deletions are marked like this. | Additions are marked like this. |
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[[Anchor(Volume)]] = Volume = [[Anchor(VolumeConversion)]] == VolumeConversion == ["mri_convert"] [[BR]] ["brik2bfloat"] [[BR]] ["minc_to_bshort"] [[BR]] ["mri_annotation2label"] [[BR]] ["mri_convert_mdh"] [[BR]] ["mri_cor2label"] [[BR]] ["mri_label2label"] [[BR]] ["mri_label2vol"] [[BR]] ["mri_surf2surf"] [[BR]] ["mri_surf2vol"] [[BR]] ["mri_vol2roi"] [[BR]] ["mri_vol2surf"] [[BR]] ["mri_volcluster"] [[BR]] ["spm2bfloat"] [[BR]] [[Anchor(MotionCorrection)]] == MotionCorrection == ["mri_motion_correct"] [[BR]] [[Anchor(Talairach)]] == Talairach == ["talairach"] [[BR]] ["talairach_mgh"] [[BR]] [[Anchor(Registration)]] == Registration == ["mri_ca_register"] [[BR]] ["mri_register"] [[BR]] ["mri_rigid_register"] [[BR]] ["mri_linear_register"] [[BR]] ["regdat2xfm"] [[BR]] [[Anchor(IntensityNormalization)]] == IntensityNormalization == ["mri_normalize"] [[BR]] [[Anchor(SkullStripping)]] == SkullStripping == ["mri_watershed"] [[Anchor(Segmentation)]] == Segmentation == ["mri_segment"] [[BR]] [[Anchor(VolumeMisc)]] == VolumeMisc == |
[[Include(Null, "Volume", 4)]] [[Include(FreeSurferCommandsVolumeConversion, , 5)]] [[Include(FreeSurferCommandsMotionCorrection, , 5)]] [[Include(FreeSurferCommandsTalairach, ,5)]] [[Include(FreeSurferCommandsRegistration, ,5)]] [[Include(FreeSurferCommandsIntensityNormalization, ,5)]] [[Include(FreeSurferCommandsSkullStripping, ,5)]] [[Include(FreeSurferCommandsSegmentation, ,5)]] [[Include(FreeSurferCommandsVolumeMisc, ,5)]] |
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| ["mri_watershed"] [[BR]] |
Index
Include(FreeSurferCommandsVolumeConversion, , 5) Include(FreeSurferCommandsMotionCorrection, , 5) Include(FreeSurferCommandsTalairach, ,5) Include(FreeSurferCommandsRegistration, ,5) Include(FreeSurferCommandsIntensityNormalization, ,5) Include(FreeSurferCommandsSkullStripping, ,5) Include(FreeSurferCommandsSegmentation, ,5) Include(FreeSurferCommandsVolumeMisc, ,5)
["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_xvolavg"] BR
1. Surface
1.1. SurfaceGeneration
["mri_tessellate"] BR
1.2. Smoothing
["mris_smooth"] BR
1.3. Inflation
["mris_inflate"] BR
1.4. TopologyFixing
["mris_fix_topology"] BR
1.5. InterSubjectMorphing
["mris_sphere"] BR ["mris_register"] BR
Anchor(FinalSurfaceGeneration)
1.6. FinalSurfaceGeneration
["mris_make_surfaces"] BR
1.7. Parcellation
["mris_ca_label"] BR ["mris_ca_train"] BR
1.8. Flattening
["mris_flatten"] BR
1.9. SurfaceMisc
["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR