Differences between revisions 2 and 11 (spanning 9 versions)

1. Index

2. Volume

2.1. VolumeConversion

["mri_convert"] BR ["brik2bfloat"] BR ["minc_to_bshort"] BR ["mri_annotation2label"] BR ["mri_convert_mdh"] BR ["mri_cor2label"] BR ["mri_label2label"] BR ["mri_surf2surf"] BR ["mri_surf2vol"] BR ["mri_vol2roi"] BR ["mri_vol2surf"] BR ["mri_volcluster"] BR ["spm2bfloat"] BR

Anchor(MotionCorrection)

2.2. MotionCorrection

["mri_motion_correct"] BR

Anchor(Talairach)

2.3. Talairach

["talairach"] BR

Anchor(Registration)

2.4. Registration

["mri_ca_register"] BR ["mri_register"] BR ["mri_rigid_register"] BR ["mri_linear_register"] BR

Anchor(IntensityNormalization)

2.5. IntensityNormalization

["mri_normalize"] BR

Anchor(SkullStripping)

2.6. SkullStripping

["mri_watershed"]

Anchor(Segmentation)

2.7. Segmentation

["mri_segment"] BR

Anchor(VolumeMisc)

2.8. VolumeMisc

["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_watershed"] BR ["mri_xvolavg"] BR

Anchor(Surface)

3. Surface

Anchor(SurfaceGeneration)

3.1. SurfaceGeneration

["mri_tessellate"] BR

Anchor(Smoothing)

3.2. Smoothing

["mris_smooth"] BR

Anchor(Inflation)

3.3. Inflation

["mris_inflate"] BR

Anchor(TopologyFixing)

3.4. TopologyFixing

["mris_fix_topology"] BR

Anchor(InterSubjectMorphing)

3.5. InterSubjectMorphing

["mris_sphere"] BR ["mris_register"] BR

Anchor(FinalSurfaceGeneration)

3.6. FinalSurfaceGeneration

["mris_make_surfaces"] BR

Anchor(Parcellation)

3.7. Parcellation

["mris_ca_label"] BR ["mris_ca_train"] BR

Anchor(Flattening)

3.8. Flattening

["mris_flatten"] BR

Anchor(SurfaceMisc)

3.9. SurfaceMisc

["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR

-  ⇤ ← Revision 2 as of 2004-07-23 22:05:44 → 
  Size: 2075
  Editor: DavidTuch
  Comment:
+   ← Revision 11 as of 2004-08-05 14:27:52 → ⇥
  Size: 3219
  Editor: BrianQuinn
  Comment: organized some of the surface binaries
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
+#pragma section-numbers on

= Index =

[[Navigation(children)]]
[[TableOfContents]]

[[Anchor(Volume)]]
= Volume =

[[Anchor(VolumeConversion)]]
== VolumeConversion ==

["mri_convert"] [[BR]]
-Line 3:
+Line 17:
+["mri_annotation2label"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
["mri_label2label"] [[BR]]
["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
["spm2bfloat"] [[BR]]

[[Anchor(MotionCorrection)]]
== MotionCorrection ==

["mri_motion_correct"] [[BR]]

[[Anchor(Talairach)]]
== Talairach ==
["talairach"] [[BR]]

[[Anchor(Registration)]]
== Registration ==
["mri_ca_register"] [[BR]]
["mri_register"] [[BR]]
["mri_rigid_register"] [[BR]]
["mri_linear_register"] [[BR]]

[[Anchor(IntensityNormalization)]]
== IntensityNormalization ==
["mri_normalize"] [[BR]]

[[Anchor(SkullStripping)]]
== SkullStripping ==
["mri_watershed"]

[[Anchor(Segmentation)]]
== Segmentation ==
["mri_segment"] [[BR]]

[[Anchor(VolumeMisc)]]
== VolumeMisc ==
-Line 5:
+Line 61:
-["mri_annotation2label"] [[BR]]
-Line 9:
+Line 64:
-["mri_ca_register"] [[BR]]
-Line 11:
+Line 65:
-["mri_convert"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
-Line 19:
+Line 70:
-["mri_label2label"] [[BR]]
-Line 21:
+Line 71:
-["mri_linear_register"] [[BR]]
-Line 26:
+Line 75:
-["mri_normalize"] [[BR]]
-Line 31:
+Line 79:
-["mri_register"] [[BR]]
-Line 33:
+Line 80:
-["mri_rigid_register"] [[BR]]
-Line 35:
+Line 81:
-["mri_segment"] [[BR]]
-Line 37:
+Line 82:
-["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
-Line 41:
+Line 84:
-["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
-Line 48:
+Line 88:
-["mris2rgb"] [[BR]]
["mris_anatomical_statsv"] [[BR]]
["mris_average_curvature"] [[BR]]
+[[Anchor(Surface)]]
= Surface =

[[Anchor(SurfaceGeneration)]]
== SurfaceGeneration ==
["mri_tessellate"] [[BR]]

[[Anchor(Smoothing)]]
== Smoothing ==
["mris_smooth"] [[BR]]

[[Anchor(Inflation)]]
== Inflation ==
["mris_inflate"] [[BR]]

[[Anchor(TopologyFixing)]]
== TopologyFixing ==
["mris_fix_topology"] [[BR]]

[[Anchor(InterSubjectMorphing)]]
== InterSubjectMorphing ==
["mris_sphere"] [[BR]]
["mris_register"] [[BR]]

[[Anchor(FinalSurfaceGeneration)]]
== FinalSurfaceGeneration ==
["mris_make_surfaces"] [[BR]]

[[Anchor(Parcellation)]]
== Parcellation ==
-Line 53:
+Line 121:
+[[Anchor(Flattening)]]
== Flattening ==
["mris_flatten"] [[BR]]

[[Anchor(SurfaceMisc)]]
== SurfaceMisc ==

["mris2rgb"] [[BR]]
["mris_anatomical_stats"] [[BR]]
["mris_average_curvature"] [[BR]]
-Line 57:
+Line 136:
-["mris_fix_topology"] [[BR]]
["mris_flatten"] [[BR]]
-Line 60:
+Line 137:
-["mris_inflate"] [[BR]]
-Line 62:
+Line 138:
-["mris_make_surfaces"] [[BR]]
-Line 64:
+Line 139:
-["mris_register"] [[BR]]
["mris_smooth"] [[BR]]
["mris_sphere"] [[BR]]
-Line 75:
+Line 147:
-["spm2bfloat"] [[BR]]