1. Volume

1.1. VolumeConversion

["mri_convert"] BR ["brik2bfloat"] BR ["minc_to_bshort"] BR ["mri_annotation2label"] BR ["mri_convert_mdh"] BR ["mri_cor2label"] BR ["mri_label2label"] BR ["mri_label2vol"] BR ["mri_surf2surf"] BR ["mri_surf2vol"] BR ["mri_vol2roi"] BR ["mri_vol2surf"] BR ["mri_volcluster"] BR ["spm2bfloat"] BR

Anchor(MotionCorrection)

1.2. MotionCorrection

["mri_motion_correct"] BR

Anchor(Talairach)

1.3. Talairach

["talairach"] BR ["talairach_mgh"] BR

Anchor(Registration)

1.4. Registration

["mri_ca_register"] BR ["mri_register"] BR ["mri_rigid_register"] BR ["mri_linear_register"] BR ["regdat2xfm"] BR

Anchor(IntensityNormalization)

1.5. IntensityNormalization

["mri_normalize"] BR

Anchor(SkullStripping)

1.6. SkullStripping

["mri_watershed"]

Anchor(Segmentation)

1.7. Segmentation

["mri_segment"] BR

Anchor(VolumeMisc)

1.8. VolumeMisc

["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_watershed"] BR ["mri_xvolavg"] BR

Anchor(Surface)

2. Surface

Anchor(SurfaceGeneration)

2.1. SurfaceGeneration

["mri_tessellate"] BR

Anchor(Smoothing)

2.2. Smoothing

["mris_smooth"] BR

Anchor(Inflation)

2.3. Inflation

["mris_inflate"] BR

Anchor(TopologyFixing)

2.4. TopologyFixing

["mris_fix_topology"] BR

Anchor(InterSubjectMorphing)

2.5. InterSubjectMorphing

["mris_sphere"] BR ["mris_register"] BR

Anchor(FinalSurfaceGeneration)

2.6. FinalSurfaceGeneration

["mris_make_surfaces"] BR

Anchor(Parcellation)

2.7. Parcellation

["mris_ca_label"] BR ["mris_ca_train"] BR

Anchor(Flattening)

2.8. Flattening

["mris_flatten"] BR

Anchor(SurfaceMisc)

2.9. SurfaceMisc

["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR

-  ⇤ ← Revision 3 as of 2004-07-28 01:13:38 → 
  Size: 2928
  Editor: DavidTuch
  Comment:
+   ← Revision 15 as of 2004-08-25 11:58:51 → ⇥
  Size: 3298
  Editor: DavidTuch
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
+#pragma section-numbers on

[[Navigation(children)]]

'''Index'''

[[TableOfContents]]
-Line 4:
+Line 12:
-[[Anchor(Conversion)]]
== Conversion ==
+[[Anchor(VolumeConversion)]]
== VolumeConversion ==

["mri_convert"] [[BR]]
["brik2bfloat"] [[BR]]
["minc_to_bshort"] [[BR]]
["mri_annotation2label"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
["mri_label2label"] [[BR]]
["mri_label2vol"] [[BR]]
["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
["spm2bfloat"] [[BR]]
-Line 10:
+Line 33:
-[[Anchor(Talairach )]]
+["mri_motion_correct"] [[BR]]

[[Anchor(Talairach)]]
-Line 12:
+Line 37:
+["talairach"] [[BR]]
["talairach_mgh"] [[BR]]
-Line 13:
+Line 40:
-[[Anchor(Registration )]]
+[[Anchor(Registration)]]
-Line 15:
+Line 42:
+["mri_ca_register"] [[BR]]
["mri_register"] [[BR]]
["mri_rigid_register"] [[BR]]
["mri_linear_register"] [[BR]]
["regdat2xfm"] [[BR]]
-Line 16:
+Line 48:
-[[Anchor(IntensityNormalization )]]
+[[Anchor(IntensityNormalization)]]
-Line 18:
+Line 50:
+["mri_normalize"] [[BR]]
-Line 19:
+Line 52:
-[[Anchor(SkullStripping )]]
+[[Anchor(SkullStripping)]]
-Line 21:
+Line 54:
+["mri_watershed"]
-Line 24:
+Line 58:
+["mri_segment"] [[BR]]
-Line 25:
+Line 60:
-[[Anchor(SurfaceGeneration)]]
== SurfaceGeneration ==
+[[Anchor(VolumeMisc)]]
== VolumeMisc ==
-Line 28:
+Line 63:
-[[Anchor(Misc)]]
== Misc ==

[[Anchor(Surface)]]
= Surface =

[[Anchor(Smoothing)]]
== Smoothing ==

[[Anchor(Inflation)]]
== Inflation ==

[[Anchor(TopologyFixing)]]
== TopologyFixing ==

[[Anchor(InterSubjectMorphing)]]
== InterSubjectMorphing ==

[[Anchor(Parcellation)]]
== Parcellation ==

[[Anchor(Flattening)]]
== Flattening ==

[[Anchor(SurfaceMisc)]]
== Misc ==

["brik2bfloat"] [[BR]]
["minc_to_bshort"] [[BR]]
-Line 59:
+Line 65:
-["mri_annotation2label"] [[BR]]
-Line 63:
+Line 68:
-["mri_ca_register"] [[BR]]
-Line 65:
+Line 69:
-["mri_convert"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
-Line 73:
+Line 74:
-["mri_label2label"] [[BR]]
 Line 75:
-["mri_linear_register"] [[BR]]
-Line 80:
+Line 79:
-["mri_normalize"] [[BR]]
-Line 85:
+Line 83:
-["mri_register"] [[BR]]
-Line 87:
+Line 84:
-["mri_rigid_register"] [[BR]]
-Line 89:
+Line 85:
-["mri_segment"] [[BR]]
-Line 91:
+Line 86:
-["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
-Line 95:
+Line 88:
-["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
-Line 102:
+Line 92:
-["mris2rgb"] [[BR]]
["mris_anatomical_statsv"] [[BR]]
["mris_average_curvature"] [[BR]]
+[[Anchor(Surface)]]
= Surface =

[[Anchor(SurfaceGeneration)]]
== SurfaceGeneration ==
["mri_tessellate"] [[BR]]

[[Anchor(Smoothing)]]
== Smoothing ==
["mris_smooth"] [[BR]]

[[Anchor(Inflation)]]
== Inflation ==
["mris_inflate"] [[BR]]

[[Anchor(TopologyFixing)]]
== TopologyFixing ==
["mris_fix_topology"] [[BR]]

[[Anchor(InterSubjectMorphing)]]
== InterSubjectMorphing ==
["mris_sphere"] [[BR]]
["mris_register"] [[BR]]

[[Anchor(FinalSurfaceGeneration)]]
== FinalSurfaceGeneration ==
["mris_make_surfaces"] [[BR]]

[[Anchor(Parcellation)]]
== Parcellation ==
-Line 107:
+Line 125:
+[[Anchor(Flattening)]]
== Flattening ==
["mris_flatten"] [[BR]]

[[Anchor(SurfaceMisc)]]
== SurfaceMisc ==

["mris2rgb"] [[BR]]
["mris_anatomical_stats"] [[BR]]
["mris_average_curvature"] [[BR]]
-Line 111:
+Line 140:
-["mris_fix_topology"] [[BR]]
["mris_flatten"] [[BR]]
-Line 114:
+Line 141:
-["mris_inflate"] [[BR]]
-Line 116:
+Line 142:
-["mris_make_surfaces"] [[BR]]
-Line 118:
+Line 143:
-["mris_register"] [[BR]]
["mris_smooth"] [[BR]]
["mris_sphere"] [[BR]]
-Line 129:
+Line 151:
-["spm2bfloat"] [[BR]]