Differences between revisions 3 and 16 (spanning 13 versions)

Index

Include(FreeSurferCommandsVolumeConversion, , 5) Include(FreeSurferCommandsMotionCorrection, , 5) Include(FreeSurferCommandsTalairach, ,5) Include(FreeSurferCommandsRegistration, ,5) Include(FreeSurferCommandsIntensityNormalization, ,5) Include(FreeSurferCommandsSkullStripping, ,5) Include(FreeSurferCommandsSegmentation, ,5) Include(FreeSurferCommandsVolumeMisc, ,5)

["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_xvolavg"] BR

Anchor(Surface)

1. Surface

Anchor(SurfaceGeneration)

1.1. SurfaceGeneration

["mri_tessellate"] BR

Anchor(Smoothing)

1.2. Smoothing

["mris_smooth"] BR

Anchor(Inflation)

1.3. Inflation

["mris_inflate"] BR

Anchor(TopologyFixing)

1.4. TopologyFixing

["mris_fix_topology"] BR

Anchor(InterSubjectMorphing)

1.5. InterSubjectMorphing

["mris_sphere"] BR ["mris_register"] BR

Anchor(FinalSurfaceGeneration)

1.6. FinalSurfaceGeneration

["mris_make_surfaces"] BR

Anchor(Parcellation)

1.7. Parcellation

["mris_ca_label"] BR ["mris_ca_train"] BR

Anchor(Flattening)

1.8. Flattening

["mris_flatten"] BR

Anchor(SurfaceMisc)

1.9. SurfaceMisc

["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR

-  ⇤ ← Revision 3 as of 2004-07-28 01:13:38 → 
  Size: 2928
  Editor: DavidTuch
  Comment:
+   ← Revision 16 as of 2004-09-01 09:49:55 → ⇥
  Size: 2618
  Editor: DavidTuch
  Comment: started Include index formatting. needs more work.
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-[[Anchor(Volume)]]
= Volume =
+#pragma section-numbers on
-Line 4:
+Line 3:
-[[Anchor(Conversion)]]
== Conversion ==
+[[Navigation(children)]]
-Line 7:
+Line 5:
-[[Anchor(MotionCorrection)]]
== MotionCorrection ==
+'''Index'''
-Line 10:
+Line 7:
-[[Anchor(Talairach )]]
== Talairach ==
+[[TableOfContents]]
-Line 13:
+Line 9:
-[[Anchor(Registration )]]
== Registration ==
+[[Include(Null, "Volume", 4)]]
 [[Include(FreeSurferCommandsVolumeConversion, , 5)]]
 [[Include(FreeSurferCommandsMotionCorrection, , 5)]]
 [[Include(FreeSurferCommandsTalairach, ,5)]]
 [[Include(FreeSurferCommandsRegistration, ,5)]]
 [[Include(FreeSurferCommandsIntensityNormalization, ,5)]]
 [[Include(FreeSurferCommandsSkullStripping, ,5)]]
 [[Include(FreeSurferCommandsSegmentation, ,5)]]
 [[Include(FreeSurferCommandsVolumeMisc, ,5)]]
-Line 16:
+Line 19:
-[[Anchor(IntensityNormalization )]]
== IntensityNormalization ==

[[Anchor(SkullStripping )]]
== SkullStripping ==

[[Anchor(Segmentation)]]
== Segmentation ==

[[Anchor(SurfaceGeneration)]]
== SurfaceGeneration ==

[[Anchor(Misc)]]
== Misc ==

[[Anchor(Surface)]]
= Surface =

[[Anchor(Smoothing)]]
== Smoothing ==

[[Anchor(Inflation)]]
== Inflation ==

[[Anchor(TopologyFixing)]]
== TopologyFixing ==

[[Anchor(InterSubjectMorphing)]]
== InterSubjectMorphing ==

[[Anchor(Parcellation)]]
== Parcellation ==

[[Anchor(Flattening)]]
== Flattening ==

[[Anchor(SurfaceMisc)]]
== Misc ==

["brik2bfloat"] [[BR]]
["minc_to_bshort"] [[BR]]
-Line 59:
+Line 21:
-["mri_annotation2label"] [[BR]]
-Line 63:
+Line 24:
-["mri_ca_register"] [[BR]]
-Line 65:
+Line 25:
-["mri_convert"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
-Line 73:
+Line 30:
-["mri_label2label"] [[BR]]
-Line 75:
+Line 31:
-["mri_linear_register"] [[BR]]
-Line 80:
+Line 35:
-["mri_normalize"] [[BR]]
-Line 85:
+Line 39:
-["mri_register"] [[BR]]
-Line 87:
+Line 40:
-["mri_rigid_register"] [[BR]]
-Line 89:
+Line 41:
-["mri_segment"] [[BR]]
-Line 91:
+Line 42:
-["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
-Line 95:
+Line 44:
-["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
-Line 100:
+Line 46:
-["mri_watershed"] [[BR]]
-Line 102:
+Line 47:
-["mris2rgb"] [[BR]]
["mris_anatomical_statsv"] [[BR]]
["mris_average_curvature"] [[BR]]
+[[Anchor(Surface)]]
= Surface =

[[Anchor(SurfaceGeneration)]]
== SurfaceGeneration ==
["mri_tessellate"] [[BR]]

[[Anchor(Smoothing)]]
== Smoothing ==
["mris_smooth"] [[BR]]

[[Anchor(Inflation)]]
== Inflation ==
["mris_inflate"] [[BR]]

[[Anchor(TopologyFixing)]]
== TopologyFixing ==
["mris_fix_topology"] [[BR]]

[[Anchor(InterSubjectMorphing)]]
== InterSubjectMorphing ==
["mris_sphere"] [[BR]]
["mris_register"] [[BR]]

[[Anchor(FinalSurfaceGeneration)]]
== FinalSurfaceGeneration ==
["mris_make_surfaces"] [[BR]]

[[Anchor(Parcellation)]]
== Parcellation ==
-Line 107:
+Line 80:
+[[Anchor(Flattening)]]
== Flattening ==
["mris_flatten"] [[BR]]

[[Anchor(SurfaceMisc)]]
== SurfaceMisc ==

["mris2rgb"] [[BR]]
["mris_anatomical_stats"] [[BR]]
["mris_average_curvature"] [[BR]]
-Line 111:
+Line 95:
-["mris_fix_topology"] [[BR]]
["mris_flatten"] [[BR]]
-Line 114:
+Line 96:
-["mris_inflate"] [[BR]]
-Line 116:
+Line 97:
-["mris_make_surfaces"] [[BR]]
-Line 118:
+Line 98:
-["mris_register"] [[BR]]
["mris_smooth"] [[BR]]
["mris_sphere"] [[BR]]
-Line 129:
+Line 106:
-["spm2bfloat"] [[BR]]