Differences between revisions 3 and 8 (spanning 5 versions)

1. Index

2. Volume

2.1. VolumeConversion

["mri_convert"] BR ["brik2bfloat"] BR ["minc_to_bshort"] BR ["mri_annotation2label"] BR ["mri_convert_mdh"] BR ["mri_cor2label"] BR ["mri_label2label"] BR ["mri_surf2surf"] BR ["mri_surf2vol"] BR ["mri_vol2roi"] BR ["mri_vol2surf"] BR ["mri_volcluster"] BR ["spm2bfloat"] BR

Anchor(MotionCorrection)

2.2. MotionCorrection

["mri_motion_correct"] BR

Anchor(Talairach)

2.3. Talairach

Anchor(Registration)

2.4. Registration

["mri_ca_register"] BR ["mri_register"] BR ["mri_rigid_register"] BR ["mri_linear_register"] BR

Anchor(IntensityNormalization)

2.5. IntensityNormalization

["mri_normalize"] BR

Anchor(SkullStripping)

2.6. SkullStripping

["mri_watershed"]

Anchor(Segmentation)

2.7. Segmentation

["mri_segment"] BR

Anchor(SurfaceGeneration)

2.8. SurfaceGeneration

Anchor(VolumeMisc)

2.9. VolumeMisc

["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_watershed"] BR ["mri_xvolavg"] BR

Anchor(Surface)

3. Surface

Anchor(SurfaceConversion)

3.1. SurfaceConversion

Anchor(Smoothing)

3.2. Smoothing

Anchor(Inflation)

3.3. Inflation

Anchor(TopologyFixing)

3.4. TopologyFixing

Anchor(InterSubjectMorphing)

3.5. InterSubjectMorphing

Anchor(Parcellation)

3.6. Parcellation

Anchor(Flattening)

3.7. Flattening

Anchor(SurfaceMisc)

3.8. SurfaceMisc

["mris2rgb"] BR ["mris_anatomical_statsv"] BR ["mris_average_curvature"] BR ["mris_ca_label"] BR ["mris_ca_train"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_fix_topology"] BR ["mris_flatten"] BR ["mris_glm"] BR ["mris_inflate"] BR ["mris_make_average_surface"] BR ["mris_make_surfaces"] BR ["mris_make_template"] BR ["mris_register"] BR ["mris_smooth"] BR ["mris_sphere"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR

-  ⇤ ← Revision 3 as of 2004-07-28 01:13:38 → 
  Size: 2928
  Editor: DavidTuch
  Comment:
+   ← Revision 8 as of 2004-08-02 18:39:02 → ⇥
  Size: 3163
  Editor: EvelinaBusa
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
+#pragma section-numbers on

= Index =

[[Navigation(children)]]
[[TableOfContents]]
-Line 4:
+Line 11:
-[[Anchor(Conversion)]]
== Conversion ==
+[[Anchor(VolumeConversion)]]
== VolumeConversion ==

["mri_convert"] [[BR]]
["brik2bfloat"] [[BR]]
["minc_to_bshort"] [[BR]]
["mri_annotation2label"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
["mri_label2label"] [[BR]]
["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
["spm2bfloat"] [[BR]]
-Line 10:
+Line 31:
-[[Anchor(Talairach )]]
+["mri_motion_correct"] [[BR]]

[[Anchor(Talairach)]]
-Line 13:
+Line 36:
-[[Anchor(Registration )]]
+[[Anchor(Registration)]]
-Line 15:
+Line 38:
+["mri_ca_register"] [[BR]]
["mri_register"] [[BR]]
["mri_rigid_register"] [[BR]]
["mri_linear_register"] [[BR]]
-Line 16:
+Line 43:
-[[Anchor(IntensityNormalization )]]
+[[Anchor(IntensityNormalization)]]
-Line 18:
+Line 45:
+["mri_normalize"] [[BR]]
-Line 19:
+Line 47:
-[[Anchor(SkullStripping )]]
+[[Anchor(SkullStripping)]]
-Line 21:
+Line 49:
+["mri_watershed"]
-Line 24:
+Line 53:
+["mri_segment"] [[BR]]
-Line 28:
+Line 58:
-[[Anchor(Misc)]]
== Misc ==
+[[Anchor(VolumeMisc)]]
== VolumeMisc ==

["mkxsubjreg"] [[BR]]
["mri_add_xform_to_header"] [[BR]]
["mri_average"] [[BR]]
["mri_ca_label"] [[BR]]
["mri_ca_normalize"] [[BR]]
["mri_ca_train"] [[BR]]
["mri_em_register"] [[BR]]
["mri_fill"] [[BR]]
["mri_gdfglm"] [[BR]]
["mri_head"] [[BR]]
["mri_info"] [[BR]]
["mri_label_volume"] [[BR]]
["mri_make_register"] [[BR]]
["mri_make_template"] [[BR]]
["mri_matrix_multiply"] [[BR]]
["mri_ms_fitparms"] [[BR]]
["mri_parse_sdcmdir"] [[BR]]
["mri_partial_ribbon"] [[BR]]
["mri_probedicom"] [[BR]]
["mri_probe_ima"] [[BR]]
["mri_relabel_hypointensities"] [[BR]]
["mri_seghead"] [[BR]]
["mri_strip_skull"] [[BR]]
["mri_surfcluster"] [[BR]]
["mri_tessellate"] [[BR]]
["mri_volsynth"] [[BR]]
["mri_wmfilter"] [[BR]]
["mri_watershed"] [[BR]]
["mri_xvolavg"] [[BR]]
-Line 33:
+Line 93:
+[[Anchor(SurfaceConversion)]]
== SurfaceConversion ==
-Line 53:
+Line 116:
-== Misc ==
+== SurfaceMisc ==
-Line 55:
+Line 118:
-["brik2bfloat"] [[BR]]
["minc_to_bshort"] [[BR]]
["mkxsubjreg"] [[BR]]
["mri_add_xform_to_header"] [[BR]]
["mri_annotation2label"] [[BR]]
["mri_average"] [[BR]]
["mri_ca_label"] [[BR]]
["mri_ca_normalize"] [[BR]]
["mri_ca_register"] [[BR]]
["mri_ca_train"] [[BR]]
["mri_convert"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
["mri_em_register"] [[BR]]
["mri_fill"] [[BR]]
["mri_gdfglm"] [[BR]]
["mri_head"] [[BR]]
["mri_info"] [[BR]]
["mri_label2label"] [[BR]]
["mri_label_volume"] [[BR]]
["mri_linear_register"] [[BR]]
["mri_make_register"] [[BR]]
["mri_make_template"] [[BR]]
["mri_matrix_multiply"] [[BR]]
["mri_ms_fitparms"] [[BR]]
["mri_normalize"] [[BR]]
["mri_parse_sdcmdir"] [[BR]]
["mri_partial_ribbon"] [[BR]]
["mri_probedicom"] [[BR]]
["mri_probe_ima"] [[BR]]
["mri_register"] [[BR]]
["mri_relabel_hypointensities"] [[BR]]
["mri_rigid_register"] [[BR]]
["mri_seghead"] [[BR]]
["mri_segment"] [[BR]]
["mri_strip_skull"] [[BR]]
["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
["mri_surfcluster"] [[BR]]
["mri_tessellate"] [[BR]]
["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
["mri_volsynth"] [[BR]]
["mri_wmfilter"] [[BR]]
["mri_watershed"] [[BR]]
["mri_xvolavg"] [[BR]]
-Line 129:
+Line 146:
-["spm2bfloat"] [[BR]]