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Size: 2992
Comment:
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Size: 2618
Comment: started Include index formatting. needs more work.
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| Deletions are marked like this. | Additions are marked like this. |
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| [[Anchor(Volume)]] = Volume = |
#pragma section-numbers on |
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| [[Anchor(VolumeConversion)]] == VolumeConversion == ["brik2bfloat"] [[BR]] ["minc_to_bshort"] [[BR]] ["mri_annotation2label"] [[BR]] ["mri_convert"] [[BR]] ["mri_convert_mdh"] [[BR]] ["mri_cor2label"] [[BR]] ["mri_label2label"] [[BR]] ["mri_surf2surf"] [[BR]] ["mri_surf2vol"] [[BR]] ["mri_vol2roi"] [[BR]] ["mri_vol2surf"] [[BR]] ["mri_volcluster"] [[BR]] ["spm2bfloat"] [[BR]] |
[[Navigation(children)]] |
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| [[Anchor(MotionCorrection)]] == MotionCorrection == |
'''Index''' |
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| [[Anchor(Talairach)]] == Talairach == |
[[TableOfContents]] |
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| [[Anchor(Registration)]] == Registration == ["mri_ca_register"] [[BR]] ["mri_register"] [[BR]] ["mri_rigid_register"] [[BR]] ["mri_linear_register"] [[BR]] [[Anchor(IntensityNormalization)]] == IntensityNormalization == ["mri_normalize"] [[BR]] [[Anchor(SkullStripping)]] == SkullStripping == [[Anchor(Segmentation)]] == Segmentation == ["mri_segment"] [[BR]] [[Anchor(SurfaceGeneration)]] == SurfaceGeneration == [[Anchor(Misc)]] == Misc == [[Anchor(Surface)]] = Surface = [[Anchor(SurfaceConversion)]] = SurfaceConversion = [[Anchor(Smoothing)]] == Smoothing == [[Anchor(Inflation)]] == Inflation == [[Anchor(TopologyFixing)]] == TopologyFixing == [[Anchor(InterSubjectMorphing)]] == InterSubjectMorphing == [[Anchor(Parcellation)]] == Parcellation == [[Anchor(Flattening)]] == Flattening == [[Anchor(SurfaceMisc)]] == Misc == |
[[Include(Null, "Volume", 4)]] [[Include(FreeSurferCommandsVolumeConversion, , 5)]] [[Include(FreeSurferCommandsMotionCorrection, , 5)]] [[Include(FreeSurferCommandsTalairach, ,5)]] [[Include(FreeSurferCommandsRegistration, ,5)]] [[Include(FreeSurferCommandsIntensityNormalization, ,5)]] [[Include(FreeSurferCommandsSkullStripping, ,5)]] [[Include(FreeSurferCommandsSegmentation, ,5)]] [[Include(FreeSurferCommandsVolumeMisc, ,5)]] |
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| ["mri_watershed"] [[BR]] | |
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| ["mris2rgb"] [[BR]] ["mris_anatomical_statsv"] [[BR]] ["mris_average_curvature"] [[BR]] |
[[Anchor(Surface)]] = Surface = [[Anchor(SurfaceGeneration)]] == SurfaceGeneration == ["mri_tessellate"] [[BR]] [[Anchor(Smoothing)]] == Smoothing == ["mris_smooth"] [[BR]] [[Anchor(Inflation)]] == Inflation == ["mris_inflate"] [[BR]] [[Anchor(TopologyFixing)]] == TopologyFixing == ["mris_fix_topology"] [[BR]] [[Anchor(InterSubjectMorphing)]] == InterSubjectMorphing == ["mris_sphere"] [[BR]] ["mris_register"] [[BR]] [[Anchor(FinalSurfaceGeneration)]] == FinalSurfaceGeneration == ["mris_make_surfaces"] [[BR]] [[Anchor(Parcellation)]] == Parcellation == |
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[[Anchor(Flattening)]] == Flattening == ["mris_flatten"] [[BR]] [[Anchor(SurfaceMisc)]] == SurfaceMisc == ["mris2rgb"] [[BR]] ["mris_anatomical_stats"] [[BR]] ["mris_average_curvature"] [[BR]] |
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| ["mris_fix_topology"] [[BR]] ["mris_flatten"] [[BR]] |
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| ["mris_inflate"] [[BR]] | |
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| ["mris_make_surfaces"] [[BR]] | |
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| ["mris_register"] [[BR]] ["mris_smooth"] [[BR]] ["mris_sphere"] [[BR]] |
Index
Include(FreeSurferCommandsVolumeConversion, , 5) Include(FreeSurferCommandsMotionCorrection, , 5) Include(FreeSurferCommandsTalairach, ,5) Include(FreeSurferCommandsRegistration, ,5) Include(FreeSurferCommandsIntensityNormalization, ,5) Include(FreeSurferCommandsSkullStripping, ,5) Include(FreeSurferCommandsSegmentation, ,5) Include(FreeSurferCommandsVolumeMisc, ,5)
["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_xvolavg"] BR
1. Surface
1.1. SurfaceGeneration
["mri_tessellate"] BR
1.2. Smoothing
["mris_smooth"] BR
1.3. Inflation
["mris_inflate"] BR
1.4. TopologyFixing
["mris_fix_topology"] BR
1.5. InterSubjectMorphing
["mris_sphere"] BR ["mris_register"] BR
Anchor(FinalSurfaceGeneration)
1.6. FinalSurfaceGeneration
["mris_make_surfaces"] BR
1.7. Parcellation
["mris_ca_label"] BR ["mris_ca_train"] BR
1.8. Flattening
["mris_flatten"] BR
1.9. SurfaceMisc
["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR