1. Volume

1.1. VolumeConversion

["mri_convert"] BR ["brik2bfloat"] BR ["minc_to_bshort"] BR ["mri_annotation2label"] BR ["mri_convert_mdh"] BR ["mri_cor2label"] BR ["mri_label2label"] BR ["mri_label2vol"] BR ["mri_surf2surf"] BR ["mri_surf2vol"] BR ["mri_vol2roi"] BR ["mri_vol2surf"] BR ["mri_volcluster"] BR ["spm2bfloat"] BR

Anchor(MotionCorrection)

1.2. MotionCorrection

["mri_motion_correct"] BR

Anchor(Talairach)

1.3. Talairach

["talairach"] BR ["talairach_mgh"] BR

Anchor(Registration)

1.4. Registration

["mri_ca_register"] BR ["mri_register"] BR ["mri_rigid_register"] BR ["mri_linear_register"] BR

Anchor(IntensityNormalization)

1.5. IntensityNormalization

["mri_normalize"] BR

Anchor(SkullStripping)

1.6. SkullStripping

["mri_watershed"]

Anchor(Segmentation)

1.7. Segmentation

["mri_segment"] BR

Anchor(VolumeMisc)

1.8. VolumeMisc

["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_watershed"] BR ["mri_xvolavg"] BR

Anchor(Surface)

2. Surface

Anchor(SurfaceGeneration)

2.1. SurfaceGeneration

["mri_tessellate"] BR

Anchor(Smoothing)

2.2. Smoothing

["mris_smooth"] BR

Anchor(Inflation)

2.3. Inflation

["mris_inflate"] BR

Anchor(TopologyFixing)

2.4. TopologyFixing

["mris_fix_topology"] BR

Anchor(InterSubjectMorphing)

2.5. InterSubjectMorphing

["mris_sphere"] BR ["mris_register"] BR

Anchor(FinalSurfaceGeneration)

2.6. FinalSurfaceGeneration

["mris_make_surfaces"] BR

Anchor(Parcellation)

2.7. Parcellation

["mris_ca_label"] BR ["mris_ca_train"] BR

Anchor(Flattening)

2.8. Flattening

["mris_flatten"] BR

Anchor(SurfaceMisc)

2.9. SurfaceMisc

["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR

-  ⇤ ← Revision 8 as of 2004-08-02 18:39:02 → 
  Size: 3163
  Editor: EvelinaBusa
  Comment:
+   ← Revision 14 as of 2004-08-09 13:00:27 → ⇥
  Size: 3275
  Editor: DavidTuch
  Comment: changed index formatting
-Deletions are marked like this.
+Additions are marked like this.
 Line 3:
-= Index =
+[[Navigation(children)]]
 Line 5:
-[[Navigation(children)]]
+'''Index'''
-Line 21:
+Line 22:
+["mri_label2vol"] [[BR]]
-Line 35:
+Line 37:
+["talairach"] [[BR]]
["talairach_mgh"] [[BR]]
-Line 54:
+Line 58:
-[[Anchor(SurfaceGeneration)]]
== SurfaceGeneration ==
-Line 94:
+Line 95:
-[[Anchor(SurfaceConversion)]]
== SurfaceConversion ==
+[[Anchor(SurfaceGeneration)]]
== SurfaceGeneration ==
["mri_tessellate"] [[BR]]
-Line 99:
+Line 101:
+["mris_smooth"] [[BR]]
-Line 102:
+Line 105:
+["mris_inflate"] [[BR]]
-Line 105:
+Line 109:
+["mris_fix_topology"] [[BR]]
-Line 108:
+Line 113:
+["mris_sphere"] [[BR]]
["mris_register"] [[BR]]

[[Anchor(FinalSurfaceGeneration)]]
== FinalSurfaceGeneration ==
["mris_make_surfaces"] [[BR]]
-Line 111:
+Line 122:
+["mris_ca_label"] [[BR]]
["mris_ca_train"] [[BR]]
-Line 114:
+Line 127:
+["mris_flatten"] [[BR]]
-Line 118:
+Line 132:
-Line 120:
+Line 133:
-["mris_anatomical_statsv"] [[BR]]
+["mris_anatomical_stats"] [[BR]]
-Line 122:
+Line 135:
-["mris_ca_label"] [[BR]]
["mris_ca_train"] [[BR]]
-Line 128:
+Line 139:
-["mris_fix_topology"] [[BR]]
["mris_flatten"] [[BR]]
-Line 131:
+Line 140:
-["mris_inflate"] [[BR]]
-Line 133:
+Line 141:
-["mris_make_surfaces"] [[BR]]
-Line 135:
+Line 142:
-["mris_register"] [[BR]]
["mris_smooth"] [[BR]]
["mris_sphere"] [[BR]]