#pragma section-numbers on == Recon-all == * [[recon-all]] * Commands, in chronological order: * [[mri_convert]] * [[mri_robust_template]] * [[mri_nu_correct.mni]] * [[talairach]] * [[mri_normalize]] * [[mri_watershed]] * [[mri_em_register]] * [[mri_ca_normalize]] * [[mri_ca_register]] * [[mri_remove_neck]] * [[mri_ca_label]] * [[mri_segstats]] * [[mri_mask]] * [[mri_segment]] * [[mri_edit_wm_with_aseg]] * [[mri_pretess]] * [[mri_fill]] * [[mri_tessellate]] * [[mris_smooth]] * [[mris_inflate]] * [[mris_sphere]] * [[mris_fix_topology]] * [[mris_make_surfaces]] * [[mris_surf2vol]] * [[mris_register]] * [[mrisp_paint]] * [[mris_ca_label]] * [[mris_anatomical_stats]] * [[mri_aparc2aseg]] == Volume == <> <> <> <> <> <> <> == Surface == <> <> <> <> <> <> <> <> <> == Registration == <>