Welcome

• Welcome to the FreeSurferWiki. The FreeSurferWiki is the central documentation source for FreeSurfer.

• Please see the FreeSurferBeginnersGuide to get started.

• If you would like to contribute to the Wiki you will need a WikiUserName. Please see GettingAccess to obtain a WikiUserName.

• General questions about FreeSurfer, and this Wiki, should be directed to the MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer mailing list). Bugs reports should be directed to the MailTo(analysis-bugs AT nmr DOT mgh DOT harvard DOT edu, analysis-bugs mailing list). Consult FreeSurferSupport for mailing lists and other helplines.

Software

• [wiki:DownloadAndInstall FreeSurfer download and install]

• [wiki:MiscellaneousDownloads Miscellaneous downloads]

• [wiki:InternalFreeSurferDistributions Information for internal (Martinos Center) users]

• [wiki:FtpFileExchange Information on FTP file exchange]

• [wiki:RemoteAccess Information on remote access]

Documentation

• FreeSurferAnalysisPipelineOverview - Overview of the FreeSurfer analysis pipeline.

• WorkFlows - Information on the how the FreeSurfer tools are used in a processing stream.

• ArticlesSlidesAndPosters - Background describing the techniques used in the FreeSurfer tools, and their usage in research.

• ["Tutorials"] - A walk-through of a FreeSurfer work-flow, covering editing and troubleshooting techniques in-depth, as well as a group study example.

• ["ToolsAndCommands"] - GUI and command-line tool documentation.

• FileFormats - Description of native FreeSurfer file formats, as well as external file formats used by FreeSurfer.

• CoordinateSystems - Details on the voxel and RAS coordinate systems used in FreeSurfer.

• DevelopersGuide - Information for developers of the FreeSurfer code-base (Martinos Center internal).

Support

• FreeSurferSupport - Mailing lists and helplines which provide user support for FreeSurfer

WikiGuidelines

• CulturalGuidelines

• StyleGuidelines

BeginnersGuides

• WikiBeginnersGuide

• FreeSurferBeginnersGuide

Feedback

• The FreeSurfer development team values your feedback. Please take a moment to visit the ["Priorities"] page and register your priority. Thanks.

• You can make comments or suggestions on our FeedBack page.

Acknowledgements

• FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6936484&p_grant_num=5R01RR01659404&p_query=&ticket=16737375&p_audit_session_id=78570196&p_keywords= R01 RR16594-01A1], and our ["Contributors"].