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| [wiki:Self:FreeSurferWiki top] | [wiki:Self:WorkFlows previous] | [wiki:Self:BasicReconstruction next] | [[FreeSurferWiki|top]] | [[WorkFlows|previous]] | [[BasicReconstruction|next]] |
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| FreeSurferWorkFlows describes processing workflows for FreeSurfer. FreeSurferWorkFlows includes: | FreeSurferWorkFlows describes processing workflows for !FreeSurfer. An overview of the major processing steps taking place in a standard !FreeSurfer workflow are described in this PDF slide presentation: [[http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/freesurfer.intro.pdf|Building Anatomical Models with Freesurfer]], and also FreeSurferAnalysisPipelineOverview. |
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| Recommended: * BasicReconstruction (fully automated) * TroubleshootingReconstruction (if the automated programs fail, manual intervention required) * HistoricalReconstruction (semi-automated, with routine use of manual edits to segmented white matter volume) * SubcorticalSegmentation (already included in BasicReconstruction, but must be done separately if using Historical workflow) |
For more detail you can view the [[FsTutorial/MorphAndRecon|Morphometry and Reconstruction section]] of the FsTutorial. |
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| User Contributed: * FreeSurferAnatomicalReconstruction |
FreeSurferWorkFlows include: * FsFastUnpackData * RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention) * LongitudinalProcessing * FreeSurferGroupAnalysis |
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| * FreeSurferIndividualAnalysis * FreeSurferGroupAnalysis * FreeSurferRemoteAccess |
* VolumeRoiCorticalThickness * PairedAnalysis |
FreeSurfer Work Flows
FreeSurferWorkFlows describes processing workflows for FreeSurfer. An overview of the major processing steps taking place in a standard FreeSurfer workflow are described in this PDF slide presentation: Building Anatomical Models with Freesurfer, and also FreeSurferAnalysisPipelineOverview.
For more detail you can view the Morphometry and Reconstruction section of the FsTutorial.
FreeSurferWorkFlows include:
RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention)