Diff for "Freesurfer_git" - Free Surfer Wiki

Differences between revisions 2 and 21 (spanning 19 versions)

Initial Git Setup (just do once)

Configuration settings:

$> git config --global user.name "John Doe"
$> git config --global user.email johndoe@nmr.mgh.harvard.edu

Checkout out the main branch:

$> git clone /space/freesurfer/repo/freesurfer
(remotely)
$> 

$> cvs checkout dev

Checkout the stable branch:

$> git clone -b stable6 /space/freesurfer/repo/freesurfer

$> cvs checkout -r stable6 dev

Daily Workflow

Commit a modified source code file:

cvs	`cvs commit -m "Added new capabilities." <file_name>`
git	`git commit -m "Added new capabilities." <file_name>`
git	`git push`

Modify and commit a data file:

cvs	`cvs commit <file_name>`
git	`git annex unlock <file_name>`
	`git annex add <file_name>`
	`git commit <file_name>`
	`git push`
`git annex copy --to origin <file_name>`

Add a data file:

cvs	`cvs add <file_name>`
cvs	`cvs commit <file_name>`
git	`git annex add <file_name>`
	`git commit <file_name>`
	`git push`
	`git annex copy --to origin <file_name>`

Remove data file:

cvs	`rm <file_name>`
	`cvs rm <file_name>`
	`cvs commit -m "Removing <file_name>" <file_name>`
git	`git rm <file_name>`
git	`git commit -m "Removing <file_name>" <file_name>`

Undo 1 commit (before push):

git

git reset --soft HEAD~1

Undo 2 commits:

git

git reset --soft HEAD~2

-  ⇤ ← Revision 2 as of 2015-07-20 15:36:52 → 
  Size: 394
  Editor: ZekeKaufman
  Comment:
+   ← Revision 21 as of 2016-07-01 10:53:59 → ⇥
  Size: 1624
  Editor: ZekeKaufman
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-== Checkout out the main branch: ==
+== Initial Git Setup (just do once) ==
 Line 3:
-'''CVS'''
+Configuration settings:
 Line 5:
-export CVSROOT=/space/repo/1/dev
cvs checkout dev
+$> git config --global user.name "John Doe"
$> git config --global user.email johndoe@nmr.mgh.harvard.edu
 Line 9:
-'''git'''
+Checkout out the main branch:
 Line 11:
-git clone /space/freesurfer/repo/freesurfer
+$> git clone /space/freesurfer/repo/freesurfer
(remotely)
$> 

$> cvs checkout dev
-Line 13:
+Line 18:
-Line 17:
+Line 23:
-# CVS
export CVSROOT=/space/repo/1/dev
cvs checkout -r stable6 dev
+$> git clone -b stable6 /space/freesurfer/repo/freesurfer

$> cvs checkout -r stable6 dev
-Line 22:
+Line 28:
-{{{
# git
git clone -b stable6 /space/freesurfer/repo/freesurfer
}}}
+== Daily Workflow ==
-Line 28:
+Line 31:
-Replace a data file:
+Commit a modified source code file:
||'''cvs'''||{{{cvs commit -m "Added new capabilities." <file_name>}}}||
||<|2>'''git'''||{{{git commit -m "Added new capabilities." <file_name>}}}||
||{{{git push}}}||

Modify and commit a data file:
||'''cvs'''||{{{cvs commit <file_name>}}}||
||<|4>'''git'''||{{{git annex unlock <file_name>}}}||
||{{{git annex add <file_name>}}}||
||{{{git commit <file_name>}}}||
||{{{git push}}}||
||{{{git annex copy --to origin <file_name>}}}||

Add a data file:
||<|2>'''cvs'''||{{{cvs add <file_name>}}}||
||{{{cvs commit <file_name>}}}||
||<|4>'''git'''||{{{git annex add <file_name>}}}||
||{{{git commit <file_name>}}}||
||{{{git push}}}||
||{{{git annex copy --to origin <file_name>}}}||


Remove data file:
||<|3>'''cvs'''||{{{rm <file_name>}}}||
||{{{cvs rm <file_name>}}}||
||{{{cvs commit -m "Removing <file_name>" <file_name>}}}||
||<|2>'''git'''||{{{git rm <file_name>}}}||
||{{{git commit -m "Removing <file_name>" <file_name>}}}||

Undo 1 commit (before push):
||'''git'''||{{{git reset --soft HEAD~1}}}||
Undo 2 commits:
||'''git'''||{{{git reset --soft HEAD~2}}}||