#acl AdminGroup:read,write,delete,revert All:read
=== FreeSurfer Course, April 4 - 6, 2011 ===
=== MGH, Charlestown Navy Yard, Building 149, Conference Room A ===
=== Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:15 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve ||
||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||
||12:15 - 1:15 ||'''Lunch''' [[attachment:lunch_map.jpg| (Suggestions)]]||-- ||-- ||
||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve ||
||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2011.ppt|FreeSurfer Applications|&do=get]] ||talk || David Salat ||
||3:15 - 3:30 ||'''break''' || || ||
||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||4:45 - 5:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff ||
||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||
'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<
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Meet us at 6:25pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held). <
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If you miss us, we are taking the 6:30pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
=== Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 12:45 ||'''Lunch''' ||-- ||-- ||
||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||1:45 - 2:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||3:15 - 3:30 ||'''break''' || || ||
||3:30 - 4:15 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||4:45 - 5:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||5:30 - 6:00 ||'''optional -''' Quality Checking a Recon ||demo ||Allison Stevens ||
=== Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A ===
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve ||
||10:00 - 10:15 ||'''break''' || || ||
||10:15 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||11:30 - 12:30 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
||12:30 - 1:30 ||'''Lunch''' ||-- ||-- ||
||''1:00 - 1:30'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] ||talk ||David Salat ||
||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl ||
||2:20 - 2:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || ||
||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||
||3:45 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||
##'''The !FreeSurfer Evaluation is [[https://spreadsheets.google.com/viewform?formkey=dHM0ZWFSY0owUVoyQmpMR3NTWUt2SHc6MA|here]]!'''