#acl LcnGroup:read,write,delete,revert All:read
=== FreeSurfer Course, April 2-4, 2012 ===
=== MGH, Charlestown Navy Yard, Building 114, Room D1 ===
'''Fill out the Course evaluation [[https://docs.google.com/spreadsheet/viewform?formkey=dFNQUmdsT001TGRvUkJqbjVYbjdSVHc6MA|here]]!!!'''
=== Monday, April 2nd - Introduction / Single Subject / Registration / Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||
||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens || ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens || ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] || ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Bruce Fischl || ||
||10:30 - 10:50 ||'''break''' || || || ||
||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || ||
||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||
||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve || ||
||12:30 - 1:30 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg| (Suggestions for where to eat)]]||-- ||-- ||
||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_12_2011_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' || ||
||1:30 - 2:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || ||
||2:10 - 2:30 ||Troubleshooting Demonstration || demo || Allison || ||
||2:30 - 2:50 ||'''break''' || || || ||
||2:50 - 3:50 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || ||
||3:50 - 4:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens || ||
||5:00 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||
||5:00 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff || ||
=== Tuesday, April 3rd - ROIs / Longitudinal / Multimodal / Group Analysis ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || ||
||9:40 - 10:10 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||
||10:10 - 10:30 ||'''break''' || || ||
||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias || ||
||11:30 - 11:50 ||QDEC demonstration ||demo ||Nick Schmansky || ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||''12:20 - 12:50'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || ||
||12:50 - 1:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||
||12:50 - 1:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || ||
||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || ||
||2:20 - 2:40 ||'''break''' || || ||
||2:40 - 3:40 ||Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || ||
||3:40 - 4:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || ||
||4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || ||
||5:00 - 5:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||
'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<
>
Meet us at 6:10pm at the front of Building 149 (map to be provided soon). <
>
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
<
>From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
=== Wednesday, April 4th - fMRI / Diffusion / Q&A ===
##[[https://docs.google.com/spreadsheet/viewform?formkey=dHVDa09yN0g1VHQzRGlEdTdiQU1xZFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!
**''For those not interested in fMRI and/or Diffusion processing, there may be the option of meeting with a !FreeSurfer staff member during the talks below. <
>These one-on-one sessions can be used to get feedback on your data and/or your analysis. Sign-up for these sessions will occur a week or so before the course date.
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || ||
||10:40 - 11:00 ||'''break''' || || ||
||11:00 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] continued ||talk ||Doug Greve || ||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff || ||
||12:40 - 1:40 ||'''Lunch''' ||-- ||-- ||
||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_14_2011_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' || ||
||1:40 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || ||
||2:20 - 2:50 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || ||
||2:50 - 3:10 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dFNQUmdsT001TGRvUkJqbjVYbjdSVHc6MA|Evaluation]] || || ||
||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || ||
||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||
||4:25 - 5:00 ||Future Directions ||talk ||Bruce Fischl || ||
||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff || ||
##'''The !FreeSurfer Evaluation is [[https://spreadsheets.google.com/viewform?formkey=dHM0ZWFSY0owUVoyQmpMR3NTWUt2SHc6MA|here]]!'''