Diff for "FsTutorial/Brazil2011CourseSchedule"

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FreeSurfer Tutorial and Workshop in São Paulo, Brazil

16, 17, & 18 (Sat.,Sun.,Mon.) April 2011

The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis.

Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

Location

Hospital das Clínicas - .kmz - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)

The course will be held at the Cancer Center Building, in the 6th floor auditorium.

Saturday, 16 April - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Pedro Paulo
9:30 - 10:00	Intro to FreeSurfer Jargon	talk	Allison Stevens
10:00 - 10:30	Introduction to Freesurfer	talk	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:45	Analyzing the Individual Subject	talk	Allison Stevens
11:45 - 12:45	Lunch	--	--
12:45 - 1:15	Tkmedit/Tksurfer demonstration	demo	Nick Schmansky
1:15 - 2:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:15 - 2:30	break
2:30- 3:00	Failure Modes	talk	Allison Stevens
3:00 - 4:00	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison
4:00 - 4:30	Quality Checking a Recon	demo	Allison Stevens
4:30 - 5:00	FreeSurfer Applications	talk	Nick Schmansky

Sunday, 17 April - Group Analysis/ ROIs / Registration / Diffusion

Time	Title	Type	Lecturer
9:30 - 10:15	Registration Methods	talk	Lilla Zollei
10:15 - 10:30	break
10:30 - 11:00	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Lilla Zollei
11:00 - 11:45	Longitudinal tutorial	tutorial	staff
11:45 - 1:00	Lunch	--	--
1:00 - 2:15	Diffusion Data Processing	talk	Lilla Zollei
2:15 - 2:30	break
2:30 - 3:00	Diffusion Data Processing	talk	Lilla Zollei
3:00 - 4:00	Diffusion Processing Tutorial	tutorial	staff
4:00 - 4:45	ROI Analysis	talk	Allison Stevens
4:45 - 5:15	ROI Analysis Tutorial	tutorial	staff

Monday, 18 April - Multi-Modal / Future Directions / fMRI / Q&A

9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Lilla Zollei
10:00 - 10:30	QDEC demonstration	demo	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:45	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
10:45 - 11:45	Group Analysis - qdec Tutorial	tutorial	staff
11:45 - 1:00	Lunch	--	--
1:00 - 2:15	FSFAST	talk	Doug Greve
2:15 - 2:30	break & Evaluation
2:30 - 3:30	FSFAST	tutorial	staff
3:30 - 4:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Brazil2011CourseSchedule (last edited 2012-06-20 20:29:07 by NickSchmansky)

-  ⇤ ← Revision 1 as of 2011-03-07 12:49:50 → 
  Size: 7049
  Editor: AllisonStevens
  Comment:
+   ← Revision 11 as of 2011-03-07 13:40:48 → ⇥
  Size: 6595
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-=== 16, 17, & 18 April 2011 ===
+=== 16, 17, & 18 (Sat.,Sun.,Mon.) April 2011 ===
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-The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis.
+The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Day 1 will be an introduction to !FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis.
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-Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).
+Computers will be provided to all pairs of registrants, which will have !FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).
 Line 20:
-=== Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting ===
+=== Saturday, 16 April - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting ===
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-||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial ||Allison Stevens ||
||8:30 - 9:00 ||'''optional -''' Intro to !FreeSurfer Jargon ||talk ||Allison Stevens ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff]] ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
+||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] ||
||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo ||
||9:30 - 10:00 || Intro to !FreeSurfer Jargon ||talk ||Allison Stevens ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Nick Schmansky ||
-Line 28:
+Line 27:
-||10:45 - 11:15 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve ||
||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl ||
||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||
+||10:45 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||
||11:45 - 12:45 ||'''Lunch''' ||-- ||-- ||
-Line 33:
+Line 30:
-||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || David Salat ||
||3:15 - 3:30 ||'''break''' || || ||
||3:30 - 4:15 || Registration Methods || talk || Lilla Zollei ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||4:45 - 5:30 ||Longitudinal tutorial ||tutorial ||staff ||
+||12:45 - 1:15 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||1:15 - 2:15 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30- 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk || Allison Stevens ||
||3:00 - 4:00 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens ||
||4:30 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || Nick Schmansky ||
-Line 43:
+Line 41:
-=== Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion ===
+=== Sunday, 17 April - Group Analysis/ ROIs / Registration / Diffusion ===
-Line 45:
+Line 43:
-||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens ||
||9:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||11:00 - 11:15 ||'''break''' || || ||
||11:15 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||11:45 - 12:45 ||Diffusion Processing Tutorial ||tutorial ||staff ||
||12:45 - 1:45 ||'''Lunch''' ||-- ||-- ||
+||9:30 - 10:15 || Registration Methods || talk || Lilla Zollei ||
||10:15 - 10:30 ||'''break''' || || ||
||10:30 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||11:00 - 11:45 ||Longitudinal tutorial ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
-Line 52:
+Line 49:
-||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||2:45 - 3:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:15 - 3:30 ||'''break''' || || ||
||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||4:30 - 5:00 ||QDEC demonstration ||demo ||Nick Schmansky ||
||5:00 - 6:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||5:00 - 6:00 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
+||1:00 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||3:00 - 4:00 ||Diffusion Processing Tutorial ||tutorial ||staff ||
||4:00 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk || Allison Stevens ||
||4:45 - 5:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
-Line 60:
+Line 56:
-=== Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A ===
||8:30 - 9:45 ||FSFAST ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || || ||
||10:00 - 11:00 ||FSFAST ||talk ||Doug Greve ||
||11:00 - 12:00 ||FSFAST ||tutorial ||staff ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
+=== Monday, 18 April - Multi-Modal / Future Directions / fMRI / Q&A ===
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Lilla Zollei ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
-Line 67:
+Line 65:
-||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat ||
##||1:30 - 1:50 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl ||
||1:50 - 2:15 ||'''break''' & Evaluation || || ||
+||1:00 - 2:15 ||FSFAST ||talk ||Doug Greve ||
||2:15 - 2:30 ||'''break''' & Evaluation || || ||
||2:30 - 3:30 ||FSFAST ||tutorial ||staff ||
-Line 72:
+Line 70:
-||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||
+||3:30 - 4:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||