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| === 16, 17, & 18 April 2011 === | === 16, 17, & 18 (Sat.,Sun.,Mon.) April 2011 === |
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| The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis. | The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Day 1 will be an introduction to !FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are 50 available spots for this course ([[http://www.neuroimagem.com/|see course registration]]). The course will not cover FS-FAST or fMRI analysis. |
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| Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer). | Computers will be provided to all pairs of registrants, which will have !FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer). |
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| === Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting === | === Saturday, 16 April - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting === |
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| ||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial ||Allison Stevens || ||8:30 - 9:00 ||'''optional -''' Intro to !FreeSurfer Jargon ||talk ||Allison Stevens || ||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff]] || ||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || ||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || |
||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] || ||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo || ||9:30 - 10:00 || Intro to !FreeSurfer Jargon ||talk ||Allison Stevens || ||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Nick Schmansky || |
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| ||10:45 - 11:15 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || ||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl || ||12:15 - 1:15 ||'''Lunch''' ||-- ||-- || |
||10:45 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens || ||11:45 - 12:45 ||'''Lunch''' ||-- ||-- || |
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| ||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison || ||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || David Salat || ||3:15 - 3:30 ||'''break''' || || || ||3:30 - 4:15 || Registration Methods || talk || Lilla Zollei || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || ||4:45 - 5:30 ||Longitudinal tutorial ||tutorial ||staff || |
||12:45 - 1:15 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky || ||1:15 - 2:15 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||2:15 - 2:30 ||'''break''' || || || ||2:30- 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk || Allison Stevens || ||3:00 - 4:00 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison || ||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens || ||4:30 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || Nick Schmansky || |
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| === Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion === | === Sunday, 17 April - Group Analysis/ ROIs / Registration / Diffusion === |
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| ||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens || ||9:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei || ||11:00 - 11:15 ||'''break''' || || || ||11:15 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||11:45 - 12:45 ||Diffusion Processing Tutorial ||tutorial ||staff || ||12:45 - 1:45 ||'''Lunch''' ||-- ||-- || |
||9:30 - 10:15 || Registration Methods || talk || Lilla Zollei || ||10:15 - 10:30 ||'''break''' || || || ||10:30 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei || ||11:00 - 11:45 ||Longitudinal tutorial ||tutorial ||staff || ||11:45 - 1:00 ||'''Lunch''' ||-- ||-- || |
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| ||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve || ||2:45 - 3:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||3:15 - 3:30 ||'''break''' || || || ||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu || ||4:30 - 5:00 ||QDEC demonstration ||demo ||Nick Schmansky || ||5:00 - 6:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||5:00 - 6:00 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || |
||1:00 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei || ||2:15 - 2:30 ||'''break''' || || || ||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei || ||3:00 - 4:00 ||Diffusion Processing Tutorial ||tutorial ||staff || ||4:00 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk || Allison Stevens || ||4:45 - 5:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || |
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| === Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A === ||8:30 - 9:45 ||FSFAST ||talk ||Doug Greve || ||9:45 - 10:00 ||'''break''' || || || ||10:00 - 11:00 ||FSFAST ||talk ||Doug Greve || ||11:00 - 12:00 ||FSFAST ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || |
=== Monday, 18 April - Multi-Modal / Future Directions / fMRI / Q&A === ||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Lilla Zollei || ||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky || ||10:30 - 10:45 ||'''break''' || || || ||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || ||11:45 - 1:00 ||'''Lunch''' ||-- ||-- || |
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| ||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat || ##||1:30 - 1:50 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl || ||1:50 - 2:15 ||'''break''' & Evaluation || || || |
||1:00 - 2:15 ||FSFAST ||talk ||Doug Greve || ||2:15 - 2:30 ||'''break''' & Evaluation || || || ||2:30 - 3:30 ||FSFAST ||tutorial ||staff || |
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| ||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff || | ||3:30 - 4:00 ||Question and Answer Session, FsQuiz ||talk ||staff || |
FreeSurfer Tutorial and Workshop in São Paulo, Brazil
16, 17, & 18 (Sat.,Sun.,Mon.) April 2011
The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are 50 available spots for this course (see course registration). The course will not cover FS-FAST or fMRI analysis.
Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).
The course will be held at São Paulo healthcare complex of HCFMUSP.
Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )
Location
Hospital das Clínicas - .kmz - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)
The course will be held at the Cancer Center Building, in the 6th floor auditorium.
Saturday, 16 April - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting
Time |
Title |
Type |
Lecturer |
8:30 - 9:00 |
Course Registration |
sign-in |
|
9:00 - 9:30 |
tutorial |
Pedro Paulo |
|
9:30 - 10:00 |
Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
10:00 - 10:30 |
talk |
Nick Schmansky |
|
10:30 - 10:45 |
break |
|
|
10:45 - 11:45 |
talk |
Allison Stevens |
|
11:45 - 12:45 |
Lunch |
-- |
-- |
12:45 - 1:15 |
Tkmedit/Tksurfer demonstration |
demo |
Nick Schmansky |
1:15 - 2:15 |
tutorial |
staff |
|
2:15 - 2:30 |
break |
|
|
2:30- 3:00 |
talk |
Allison Stevens |
|
3:00 - 4:00 |
Troubleshooting Demonstration, Troubleshooting Tutorial |
tutorial |
staff, Allison |
4:00 - 4:30 |
Quality Checking a Recon |
demo |
Allison Stevens |
4:30 - 5:00 |
talk |
Nick Schmansky |
Sunday, 17 April - Group Analysis/ ROIs / Registration / Diffusion
Time |
Title |
Type |
Lecturer |
9:30 - 10:15 |
Registration Methods |
talk |
Lilla Zollei |
10:15 - 10:30 |
break |
|
|
10:30 - 11:00 |
talk |
Lilla Zollei |
|
11:00 - 11:45 |
Longitudinal tutorial |
tutorial |
staff |
11:45 - 1:00 |
Lunch |
-- |
-- |
1:00 - 2:15 |
talk |
Lilla Zollei |
|
2:15 - 2:30 |
break |
|
|
2:30 - 3:00 |
talk |
Lilla Zollei |
|
3:00 - 4:00 |
Diffusion Processing Tutorial |
tutorial |
staff |
4:00 - 4:45 |
talk |
Allison Stevens |
|
4:45 - 5:15 |
tutorial |
staff |
Monday, 18 April - Multi-Modal / Future Directions / fMRI / Q&A
9:00 - 10:00 |
talk |
Lilla Zollei |
|
10:00 - 10:30 |
QDEC demonstration |
demo |
Nick Schmansky |
10:30 - 10:45 |
break |
|
|
10:45 - 11:45 |
tutorial |
staff |
|
10:45 - 11:45 |
tutorial |
staff |
|
11:45 - 1:00 |
Lunch |
-- |
-- |
1:00 - 2:15 |
FSFAST |
talk |
Doug Greve |
2:15 - 2:30 |
break & Evaluation |
|
|
2:30 - 3:30 |
FSFAST |
tutorial |
staff |
3:30 - 4:00 |
Question and Answer Session, FsQuiz |
talk |
staff |