Diff for "FsTutorial/Brazil2011CourseSchedule"

Differences between revisions 13 and 46 (spanning 33 versions)

FreeSurfer Tutorial and Workshop in São Paulo, Brazil

16, 17, & 18 (Sat.,Sun.,Mon.) April 2011

The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Topics are listed below. There are 40 available spots for this course (see course registration).

Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

Location

Hospital das Clínicas - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)

The course will be held at the Radiology Center Building, in the Amphitheatre C.

Saturday, 16 April - Introduction / Single Subject / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Pedro Paulo de M. Oliveira Jr.
9:30 - 10:00	Intro to FreeSurfer Jargon	talk	Pedro Paulo de M. Oliveira Jr.
10:00 - 10:30	Introduction to Freesurfer	talk	Nick Schmansky
10:30 - 11:00	FreeSurfer Applications, Publications	talk	Nick Schmansky
11:00 - 11:30	break
11:30 - 12:30	Analyzing the Individual Subject	talk	Allison Stevens
12:30 - 1:30	lunch	--	--
1:30 - 2:00	Tkmedit/Tksurfer demonstration	demo	Nick Schmansky
2:00 - 3:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
3:00 - 3:30	break
3:30- 4:00	Failure Modes	talk	Allison Stevens
4:00 - 4:30	Quality Checking a Recon	demo	Allison Stevens
4:30 - 5:30	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison

Sunday, 17 April - Group Analysis / Registration / Longitudinal / ROIs

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Lilla Zollei
10:00 - 10:30	QDEC demonstration	demo	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:15	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
11:15 - 11:45	Group Analysis - qdec Tutorial	tutorial	staff
11:45 - 1:00	lunch	--	--
1:00 - 1:45	Registration Methods	talk	Lilla Zollei
2:15 - 2:45	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Lilla Zollei
2:45 - 3:00	break
3:00 - 3:30	ROI Analysis	talk	Allison Stevens
3:30 - 4:00	A Non-physicist's Intro to MR SpinBench	talk	Andre van der Kouwe
4:00 - 4:30	ROI Analysis Tutorial	tutorial	staff
4:30 - 5:00	Longitudinal Tutorial	tutorial	staff

Monday, 18 April - Diffusion / Tracula / MRI basics / Apps / Q&A

Time	Title	Type	Lecturer
9:00 - 9:30	Diffusion Data Processing,dtrecon intro	talk	Lilla Zollei
9:30 - 10:30	Diffusion Processing Tutorial	tutorial	staff
10:30 - 11:00	break and group photo
11:00 - 11:30	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Lilla Zollei
11:30 - 12:30	Tracula Tutorial	tutorial	staff
12:30 - 1:30	lunch	--	--
1:30 - 2:00	MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
2:00 - 2:30	break and evaluations
2:30 - 3:00	Motion-compensated neuroanatomical imaging	talk	Andre van der Kouwe
3:00 - 3:30	iSurf and local FreeSurfer Applications	talk	Pedro Paulo de M. Oliveira Jr.
3:30 - 4:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Brazil2011CourseSchedule (last edited 2012-06-20 20:29:07 by NickSchmansky)

-  ⇤ ← Revision 13 as of 2011-03-07 13:49:09 → 
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+   ← Revision 46 as of 2012-06-20 20:29:07 → ⇥
  Size: 6899
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-Deletions are marked like this.
+Additions are marked like this.
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-#acl AdminGroup:read,write,delete,revert PedroOliveira:read,write,delete,revert All:read
+###acl AdminGroup:read,write,delete,revert PedroOliveira:read,write,delete,revert All:
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-The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Day 1 will be an introduction to !FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are 40 available spots for this course ([[http://www.neuroimagem.com/|see course registration]]). The course will not cover FS-FAST or fMRI analysis.
+The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Topics are listed below. There are 40 available spots for this course ([[http://www.neuroimagem.com/|see course registration]]).
 Line 16:
-[[http://www.hcnet.usp.br/|Hospital das Clínicas]] - [[attachment:HospitaldasClinicas.kmz|.kmz|&do=get]] - [[http://maps.google.com/maps?q=Avenida%20Dr%20Eneas%20de%20Carvalho%20Aguiar%2C%2044%20-%20S%C3%A3o%20Paulo%20-%20SP%20-%20Brazil&oe=utf-8&rls=org.mozilla:en-US:official&client=firefox-a&um=1&ie=UTF-8&sa=N&hl=en&tab=wl|Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil]] -  ([[http://www.atlanticahotels.com.br/atlantica%5Fing/hoteis/estrutura.asp?Numfuncionalidade=292&NumHotel=34&Cidade=S%E3o%20Paulo|hotel]],[[http://maps.google.com/maps?hl=en&q=rua%20Oscar%20Freire%2C%201948%20-%20Jardim%20Paulista%2C%20S%C3%A3o%20Paulo%20-%20SP%2C%2005409000%2C%20Brazil&um=1&ie=UTF-8&sa=N&tab=wl|map]])
+[[http://www.hcnet.usp.br/|Hospital das Clínicas]] - [[http://maps.google.com/maps?q=Avenida%20Dr%20Eneas%20de%20Carvalho%20Aguiar%2C%2044%20-%20S%C3%A3o%20Paulo%20-%20SP%20-%20Brazil&oe=utf-8&rls=org.mozilla:en-US:official&client=firefox-a&um=1&ie=UTF-8&sa=N&hl=en&tab=wl|Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil]] -  ([[http://www.atlanticahotels.com.br/atlantica/hoteis/estrutura.asp?Numfuncionalidade=292&NumHotel=34&Cidade=S%E3o%20Paulo&titulo=Apresenta%E7%E3o|hotel]],[[http://maps.google.com/maps?hl=en&q=rua%20Oscar%20Freire%2C%201948%20-%20Jardim%20Paulista%2C%20S%C3%A3o%20Paulo%20-%20SP%2C%2005409000%2C%20Brazil&um=1&ie=UTF-8&sa=N&tab=wl|map]])
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-The course will be held at the [[http://upload.wikimedia.org/wikipedia/commons/7/72/Hospitaldocancerdesp2.jpg|Cancer Center Building]], in the 6th floor auditorium.
+The course will be held at the [[http://upload.wikimedia.org/wikipedia/commons/7/72/Hospitaldocancerdesp2.jpg|Radiology Center Building]], in the Amphitheatre C.
 Line 20:
-=== Saturday, 16 April - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting ===
+=== Saturday, 16 April - Introduction / Single Subject / Troubleshooting ===
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-||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo ||
||9:30 - 10:00 || Intro to !FreeSurfer Jargon ||talk ||Allison Stevens ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Nick Schmansky ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||
||11:45 - 12:45 ||'''Lunch''' ||-- ||-- ||
##||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|A Non-physicist's Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' ||
||12:45 - 1:15 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||1:15 - 2:15 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30- 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk || Allison Stevens ||
||3:00 - 4:00 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
+||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo de M. Oliveira Jr.||
||9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
||10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]], [[Publications]] ||talk || Nick Schmansky ||
||11:00 - 11:30 ||'''break''' || || ||
||11:30 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.AS.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||
||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||
||1:30 - 2:00 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||2:00 - 3:00 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||3:00 - 3:30 ||'''break''' || || ||
||3:30- 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
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+Line 35:
-||4:30 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || Nick Schmansky ||
+||4:30 - 5:30 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
-Line 40:
+Line 39:
-=== Sunday, 17 April - Group Analysis/ ROIs / Registration / Diffusion ===
+=== Sunday, 17 April - Group Analysis / Registration / Longitudinal / ROIs ===
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+Line 41:
-||9:30 - 10:15 || Registration Methods || talk || Lilla Zollei ||
||10:15 - 10:30 ||'''break''' || || ||
||10:30 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||11:00 - 11:45 ||Longitudinal tutorial ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
##||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||1:00 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||3:00 - 4:00 ||Diffusion Processing Tutorial ||tutorial ||staff ||
||4:00 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk || Allison Stevens ||
||4:45 - 5:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||


=== Monday, 18 April - Multi-Modal / Future Directions / fMRI / Q&A ===
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Lilla Zollei ||
+||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || Lilla Zollei ||
-Line 61:
+Line 44:
-||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
##||''12:40 - 1:00'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:00 - 2:15 ||FSFAST ||talk ||Doug Greve ||
||2:15 - 2:30 ||'''break''' & Evaluation || || ||
||2:30 - 3:30 ||FSFAST ||tutorial ||staff ||
##||2:15 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Doug Greve ||
##||3:30 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
+||10:45 - 11:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||11:15 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''lunch''' ||-- ||-- ||
||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]]|| talk || Lilla Zollei ||
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||2:45 - 3:00 ||'''break''' || || ||
||3:00 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Allison Stevens ||
||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]] ||talk || Andre van der Kouwe||
||4:00 - 4:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||4:30 - 5:00 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||

=== Monday, 18 April - Diffusion / Tracula / MRI basics / Apps / Q&A ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||Lilla Zollei ||
||9:30 - 10:30 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||10:30 - 11:00 ||'''break and [[attachment:IMG_4834.JPG|group photo]]''' || || ||
||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Lilla Zollei||
||11:30 - 12:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||
||2:00 - 2:30 ||'''break and [[ https://spreadsheets.google.com/viewform?formkey=dGpBYmJld1hhbXlkRjg0ZHIxblJCeWc6MA|evaluations]]''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||
||3:00 - 3:30 ||[[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] and [[attachment:LocalApplicationsFSCourse.ppt|local FreeSurfer Applications]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||