Diff for "FsTutorial/Brazil2011CourseSchedule"

Differences between revisions 14 and 24 (spanning 10 versions)

FreeSurfer Tutorial and Workshop in São Paulo, Brazil

16, 17, & 18 (Sat.,Sun.,Mon.) April 2011

The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Topics are listed below. There are 40 available spots for this course (see course registration).

Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

Location

Hospital das Clínicas - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)

The course will be held at the Radiology Center Building, in the Amphitheatre C.

Saturday, 16 April - Introduction / Single Subject / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Pedro Paulo de M. Oliveira Jr.
9:30 - 10:00	Intro to FreeSurfer Jargon	talk	Pedro Paulo de M. Oliveira Jr.
10:00 - 10:30	Introduction to Freesurfer	talk	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:45	Analyzing the Individual Subject	talk	Allison Stevens
11:45 - 12:45	Lunch	--	--
12:45 - 1:15	Tkmedit/Tksurfer demonstration	demo	Nick Schmansky
1:15 - 2:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:15 - 2:30	break
2:30- 3:00	Failure Modes	talk	Allison Stevens
3:00 - 4:00	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison
4:00 - 4:30	Quality Checking a Recon	demo	Allison Stevens
4:30 - 5:00	FreeSurfer Applications	talk	Nick Schmansky

Sunday, 17 April - Longitudinal / Registration / ROIs /Diffusion

Time	Title	Type	Lecturer
9:00 - 9:45	Registration Methods	talk	Lilla Zollei
9:45 - 10:15	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Lilla Zollei
10:15 - 10:30	break
10:30 - 10:45	Longitudinal Tutorial	tutorial	staff
10:45 -11:15	ROI Analysis	talk	Allison Stevens
11:15 - 11:45	ROI Analysis Tutorial	tutorial	staff
11:45 - 1:00	Lunch	--	--
1:00 - 2:15	Diffusion Data Processing	talk	Lilla Zollei
2:15 - 2:30	break
2:30 - 3:00	Diffusion Data Processing	talk	Lilla Zollei
3:00 - 4:00	Diffusion Processing Tutorial	tutorial	staff

Monday, 18 April - Group Analysis / Q&A

9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Lilla Zollei
10:00 - 10:30	QDEC demonstration	demo	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:45	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
10:45 - 11:45	Group Analysis - qdec Tutorial	tutorial	staff
11:45 - 1:00	Lunch	--	--
1:00 - 2:15	TBD	TBD	TBD
2:15 - 2:30	break & Evaluation
2:30 - 3:30	TBD	TBD	TBD
3:30 - 4:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Brazil2011CourseSchedule (last edited 2012-06-20 20:29:07 by NickSchmansky)

-  ⇤ ← Revision 14 as of 2011-03-07 13:50:28 → 
  Size: 6628
  Editor: AllisonStevens
  Comment:
+   ← Revision 24 as of 2011-04-11 12:51:29 → ⇥
  Size: 6583
  Editor: NickSchmansky
  Comment: links to long and diff tuts
-Deletions are marked like this.
+Additions are marked like this.
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-#acl AdminGroup:read,write,delete,revert PedroOliveira:read,write,delete,revert All:read
+###acl AdminGroup:read,write,delete,revert PedroOliveira:read,write,delete,revert All:
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-The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Day 1 will be an introduction to !FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are 40 available spots for this course ([[http://www.neuroimagem.com/|see course registration]]). The course will not cover FS-FAST or fMRI analysis.
+The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Topics are listed below. There are 40 available spots for this course ([[http://www.neuroimagem.com/|see course registration]]).
 Line 16:
-[[http://www.hcnet.usp.br/|Hospital das Clínicas]] - [[attachment:HospitaldasClinicas.kmz|.kmz|&do=get]] - [[http://maps.google.com/maps?q=Avenida%20Dr%20Eneas%20de%20Carvalho%20Aguiar%2C%2044%20-%20S%C3%A3o%20Paulo%20-%20SP%20-%20Brazil&oe=utf-8&rls=org.mozilla:en-US:official&client=firefox-a&um=1&ie=UTF-8&sa=N&hl=en&tab=wl|Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil]] -  ([[http://www.atlanticahotels.com.br/atlantica%5Fing/hoteis/estrutura.asp?Numfuncionalidade=292&NumHotel=34&Cidade=S%E3o%20Paulo|hotel]],[[http://maps.google.com/maps?hl=en&q=rua%20Oscar%20Freire%2C%201948%20-%20Jardim%20Paulista%2C%20S%C3%A3o%20Paulo%20-%20SP%2C%2005409000%2C%20Brazil&um=1&ie=UTF-8&sa=N&tab=wl|map]])
+[[http://www.hcnet.usp.br/|Hospital das Clínicas]] - [[http://maps.google.com/maps?q=Avenida%20Dr%20Eneas%20de%20Carvalho%20Aguiar%2C%2044%20-%20S%C3%A3o%20Paulo%20-%20SP%20-%20Brazil&oe=utf-8&rls=org.mozilla:en-US:official&client=firefox-a&um=1&ie=UTF-8&sa=N&hl=en&tab=wl|Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil]] -  ([[http://www.atlanticahotels.com.br/atlantica/hoteis/estrutura.asp?Numfuncionalidade=292&NumHotel=34&Cidade=S%E3o%20Paulo&titulo=Apresenta%E7%E3o|hotel]],[[http://maps.google.com/maps?hl=en&q=rua%20Oscar%20Freire%2C%201948%20-%20Jardim%20Paulista%2C%20S%C3%A3o%20Paulo%20-%20SP%2C%2005409000%2C%20Brazil&um=1&ie=UTF-8&sa=N&tab=wl|map]])
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-The course will be held at the [[http://upload.wikimedia.org/wikipedia/commons/7/72/Hospitaldocancerdesp2.jpg|Cancer Center Building]], in the 6th floor auditorium.
+The course will be held at the [[http://upload.wikimedia.org/wikipedia/commons/7/72/Hospitaldocancerdesp2.jpg|Radiology Center Building]], in the Amphitheatre C.
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-=== Saturday, 16 April - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting ===
+=== Saturday, 16 April - Introduction / Single Subject / Troubleshooting ===
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-||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo ||
||9:30 - 10:00 || Intro to !FreeSurfer Jargon ||talk ||Allison Stevens ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Nick Schmansky ||
+||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo de M. Oliveira Jr.||
||9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
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-##||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|A Non-physicist's Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' ||
+##||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|&do=get|A Non-physicist's Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' ||
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-||2:30- 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk || Allison Stevens ||
+||2:30- 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
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-||4:30 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || Nick Schmansky ||
+||4:30 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] ||talk || Nick Schmansky ||
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+=== Sunday, 17 April - Longitudinal / Registration / ROIs /Diffusion ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:45 || Registration Methods || talk || Lilla Zollei ||
||9:45 - 10:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||10:15 - 10:30 ||'''break''' || || ||
||10:30 - 10:45 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||10:45 -11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk || Allison Stevens ||
||11:15 - 11:45 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
##||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|&do=get|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||1:00 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing|&do=get]] ||talk ||Lilla Zollei ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing|&do=get]] ||talk ||Lilla Zollei ||
||3:00 - 4:00 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
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+Line 55:
-=== Sunday, 17 April - Group Analysis/ ROIs / Registration / Diffusion ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:30 - 10:15 || Registration Methods || talk || Lilla Zollei ||
||10:15 - 10:30 ||'''break''' || || ||
||10:30 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||11:00 - 11:45 ||Longitudinal tutorial ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
##||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||1:00 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||3:00 - 4:00 ||Diffusion Processing Tutorial ||tutorial ||staff ||
||4:00 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk || Allison Stevens ||
||4:45 - 5:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||


=== Monday, 18 April - Multi-Modal / Future Directions / fMRI / Q&A ===
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Lilla Zollei ||
+=== Monday, 18 April - Group Analysis / Q&A ===
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || Lilla Zollei ||
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-##||''12:40 - 1:00'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:00 - 2:15 ||TBD  ||TBD ||TBD ||
+##||''12:40 - 1:00'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:00 - 2:15 ||TBD ||TBD ||TBD ||
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+Line 66:
-##||2:15 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Doug Greve ||
+##||2:15 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||