Diff for "FsTutorial/CphAug2016CourseSchedule"

Differences between revisions 1 and 8 (spanning 7 versions)

FreeSurfer Course, August 10-12

Wednesday, August 10th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Allison Stevens
9:30 - 9:45	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens & Lilla Zollei
9:45 - 10:00	break
10:00 - 10:30	Introduction to Freesurfer	talk	Emily Lindemer
10:30 - 11:30	Analyzing the Individual Subject	talk	Emily Lindemer
11:30 - 11:45	Freeview demonstration	demo	Allison Stevens
11:45 - 12:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
12:15 - 1:15	Lunch	--	--
1:15 - 1:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
1:45 - 2:30	FreeSurfer Troubleshooting	talk	Allison Stevens
2:30 - 2:45	Freeview Troubleshooting demonstration	demo	Allison Stevens
2:45 - 3:05	break
3:05 - 4:05	Troubleshooting Tutorial	tutorial	staff
4:05 - 5:05	Quality Checking a Recon	demo	Allison Stevens
5:05 - 5:35	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Lilla Zollei

Thursday, August 11th - Group Analysis / ROI Analysis / Longitudinal

Time	Title	Type	Lecturer
9:00 - 9:40	NRU - A high resolution in vivo atlas of the human brain's serotonin system
9:40 - 10:30	Group Analysis	talk	Emily Lindemer
10:30 - 10:50	break
10:50 - 11:30	Group Analysis Tutorial	tutorial	staff
11:30 - 11:50	Multiple Comparisons	talk	Emily Lindemer
11:50 - 12:10	QDEC demonstration	demo	Martin Reuter
12:10 - 1:10	Lunch	--	--
1:10 - 1:30	Multiple Comparisons Tutorial	tutorial	staff
1:30 - 2:10	QDEC Tutorial	tutorial	staff
2:10 - 2:40	ROI Analysis	talk	Martin Reuter
2:40 - 3:00	break
3:00 - 3:30	ROI Analysis Tutorial	tutorial	staff
3:30 - 4:00	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
4:00 - 4:40	Longitudinal Tutorial	tutorial	staff
5:30 - 5:45	Question and Answer Session (Answers to online questions here)	talk	staff

Friday, August 12th - Multimodal / Diffusion / Future Directions

Time	Title	Type	Lecturer
9:00 - 10:00	Multi-Modal Integration	talk	Martin Reuter
10:00 - 11:00	Multi-Modal Integration Tutorial	tutorial	staff
11:00 - 11:15	break
11:15 - 12:00	Introduction to Diffusion MRI	talk	Lilla Zollei
12:00 - 12:30	Diffusion Tutorial	tutorial	staff
11:40 - 12:40	Lunch	--	--
11:40 - 12:40	NRU - PLS applied to PET data in SAD	--	--
2:25 - 2:45	break & Evaluation
2:45 - 3:35	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Lilla Zollei
3:35 - 4:20	Tracula Tutorial	tutorial	staff
4:20 - 4:50	Future Directions	talk	Martin Reuter
4:50 - 5:05	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

No time?

optional technical talk - Registration Methods

talk

Lilla Zollei

FsTutorial/CphAug2016CourseSchedule (last edited 2017-09-26 11:40:50 by MorganFogarty)

-  ⇤ ← Revision 1 as of 2015-07-28 10:05:29 → 
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-## page was renamed from FsTutorial/March2015CourseScheduleScenario3
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-'''!FreeSurfer Course, September 28 - Oct 1'''
+'''!FreeSurfer Course, August 10-12'''
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-=== 7:30 - 9:30am Registration Desk Open ===
==== Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting ====
+==== Wednesday, August 10th - Introduction / Single Subject Analysis /Troubleshooting ====
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-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Moreau & Lilla Zollei ||
||9:15 - 9:30 ||'''break''' || || ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||11:10 - 11:30 ||'''break''' || || ||
||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Doug Greve ||
||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee Tirrell ||
||1:30 - 2:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
||3:00 - 3:20 ||'''break''' || || ||
||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani Varjabedian ||
||4:00 - 5:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Stevens ||
||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Stevens & Lilla Zollei ||
||9:45 - 10:00 ||'''break''' || || ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Emily Lindemer ||
||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Emily Lindemer ||
||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||
||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||
||1:15 - 1:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||1:45 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Allison Stevens ||
||2:30 - 2:45 ||Freeview Troubleshooting demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||
||2:45 - 3:05 ||'''break''' || || ||
||3:05 - 4:05 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:05 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Allison Stevens ||
||5:05 - 5:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei ||
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-==== Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI ====
+==== Thursday, August 11th - Group Analysis / ROI Analysis / Longitudinal  ====
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-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||Emily Lindemer ||
||10:20 - 10:40 ||'''break''' || ||
||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Martin Reuter ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni ||
+||9:00 - 9:40 ||NRU - A high resolution in vivo atlas of the human brain's serotonin system || || ||
||9:40 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:30 - 10:50 ||'''break''' || ||
||10:50 - 11:30 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:30 - 11:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||11:50 - 12:10 ||QDEC demonstration ||demo ||Martin Reuter ||
||12:10 - 1:10 ||'''Lunch''' ||-- ||-- ||
||1:10 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:30 - 2:10 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:10 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Martin Reuter ||
||2:40 - 3:00 ||'''break''' || ||
||3:00 - 3:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||4:00 - 4:40 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
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-==== Wednesday, September 30th - fMRI / Multimodal /  Diffusion / Future Directions / Q&A ====
+==== Friday, August 12th - Multimodal /  Diffusion / Future Directions  ====
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-||8:30 - 9:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1]] ||talk ||Doug Greve ||
||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
+||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration]] ||talk ||Martin Reuter ||
||10:00 - 11:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||11:00 - 11:15 ||'''break''' || ||
||11:15 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Lilla Zollei ||
||12:00 - 12:30 || Diffusion Tutorial || tutorial || staff||
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-||12:40 - 1:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2]] ||talk ||Lilla Zollei ||
||1:10 - 2:25 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
+||11:40 - 12:40 ||NRU - PLS applied to PET data in SAD ||-- ||-- ||
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-||2:45 - 3:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
+||2:45 - 3:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Lilla Zollei||
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-||4:20 - 4:50 ||Future Directions ||talk ||TBD ||
+||4:20 - 4:50 ||Future Directions ||talk ||Martin Reuter ||
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-==== Thursday, October 1st - Technical talks ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
||9:30 - 10:30 ||More Quality Checking a Recon ||demo ||Allison Stevens ||
+||No time? ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||