Diff for "FsTutorial/May2014CourseSchedule"

Differences between revisions 4 and 13 (spanning 9 versions)

FreeSurfer Course, May 5-7, 2014
MGH, Charlestown Navy Yard, Building 114, Room D1

8:00 - 9:30am Registration Desk Open

Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	tutorial	Ender Konukoglu
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Ender Konukoglu
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:00	Analyzing the Individual Subject	talk	Bruce Fischl
11:00 - 11:20	break
11:20 - 12:00	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
12:00 - 1:00	Lunch (Suggestions for where to eat)	--	--
1:00 - 1:20	Freeview demonstration	demo	Louis Vinke
1:20 - 2:20	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:20 - 2:50	FreeSurfer Troubleshooting	talk	Bruce Fischl
2:50 - 3:10	break
3:10 - 3:50	Quality Checking a Recon	demo	Allison Stevens
3:50 - 4:50	Troubleshooting Tutorial	tutorial	staff
4:50 - 5:00	Question and Answer Session (Answers to online questions here)	talk	staff

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (The next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).

Tuesday, May 6th - Group Analysis / ROI Analysis / Multimodal

Time

Title

Type

Lecturer

9:00 - 9:40

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Doug Greve

9:40 - 10:20

Group Analysis

talk

Ender Konukoglu

10:20 - 10:40

break

10:40 - 11:20

Group Analysis Tutorial

tutorial

staff

11:20 - 11:40

Multiple Comparisons

talk

Doug Greve

11:40 - 12:00

QDEC demonstration

demo

Doug Greve

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Multiple Comparisons Tutorial

tutorial

staff

1:20 - 2:00

QDEC Tutorial

tutorial

staff

2:00 - 2:30

ROI Analysis

talk

Martin Reuter

2:30 - 2:50

break

2:50 - 3:20

ROI Analysis Tutorial

tutorial

staff

3:20 - 3:50

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

3:50 - 4:30

Longitudinal Tutorial

tutorial

staff

4:30 - 5:30

Basics of fMRI Analysis

talk

Jon Polimeni

Wednesday, May 7th - fMRI / Multimodal / Longitudinal / Future Directions / Q&A

Time

Title

Type

Lecturer

9:00 - 9:45

FSFAST

talk

Doug Greve

9:45 - 10:00

break

10:00 - 10:40

FSFAST

talk

Doug Greve

10:40 - 11:40

FSFAST Tutorial

tutorial

staff

11:40 - 12:40

Lunch

--

--

12:40 - 1:40

Multi-Modal Integration, Part 1

talk

Lilla Zollei

1:40 - 2:55

Multi-Modal Integration Tutorial

tutorial

staff

2:55 - 3:15

break & Evaluation

3:15 - 3:45

Future Directions

talk

TBD

3:45 - 4:15

optional technical talk - MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

4:15 - 4:45

optional technical talk - Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

4:45 - 5:15

optional technical talk - Registration Methods

talk

Lilla Zollei

5:15 - 5:30

Question and Answer Session (Answers to online questions here), FsQuiz

talk

staff

FsTutorial/May2014CourseSchedule (last edited 2017-09-26 11:36:15 by MorganFogarty)

-  ⇤ ← Revision 4 as of 2014-04-11 10:15:52 → 
  Size: 7614
  Editor: AllisonStevens
  Comment:
+   ← Revision 13 as of 2014-04-27 15:19:17 → ⇥
  Size: 7287
  Editor: AllisonStevens
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-=== Monday, Nov 4th - Introduction / Single Subject Analysis /Troubleshooting ===
+=== Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting ===
 Line 13:
-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Allison Stevens ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt.pptx|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Ender Konukoglu ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt.pptx|Intro to FreeSurfer Jargon|&do=get]] ||talk || Ender Konukoglu ||
 Line 17:
-||10:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
+||10:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Bruce Fischl ||
 Line 19:
-||11:20 - 12:05 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:05 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||1:00 - 1:30 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||
||1:30 - 2:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
||3:00 - 3:20 ||'''break''' || || ||
||3:20 - 4:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||4:00 - 5:00 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||11:20 - 12:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||1:00 - 1:20 ||Freeview demonstration ||demo ||Louis Vinke ||
||1:20 - 2:20 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:20 - 2:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
||2:50 - 3:10 ||'''break''' || || ||
||3:10 - 3:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||3:50 - 4:50 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:50 - 5:00 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
 Line 33:
-Meet us at 6:10pm at the front of Building 149 (map to be provided soon). <<BR>>
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
<<BR>>From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
+Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>>
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. ''(The next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).''
-Line 37:
+Line 36:
-=== Tuesday, Nov 5th - Group Analysis / ROI Analysis / Multimodal ===
+=== Tuesday, May 6th - Group Analysis / ROI Analysis / Multimodal ===
-Line 40:
+Line 39:
-||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || ? ||
+||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Ender Konukoglu  ||
-Line 43:
+Line 42:
-||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || ? ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||? ||
+||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || Doug Greve ||
||11:40 - 12:00 ||QDEC demonstration ||demo || Doug Greve ||
-Line 48:
+Line 47:
-||2:00 - 3:00  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||3:00 - 3:20 ||'''break''' || ||
||3:20 - 3:50  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:50 - 4:20|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||4:20 - 5:00 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||5:00 - 6:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni ||
+||2:00 - 2:30  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Martin Reuter||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni ||
-Line 63:
+Line 62:
-||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 1|&do=get]] ||talk ||Doug Greve ||
||9:30 - 10:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 1]] ||tutorial ||staff ||
||10:00 - 10:15 ||'''break''' || ||
||10:15 - 10:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||10:55 - 11:15 ||'''break''' || ||
||11:15 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] continued ||talk ||Doug Greve ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 2:00 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2|&do=get]] ||talk ||Doug Greve ||
||2:30 - 3:15||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff ||
||3:15 - 3:35 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dDNaOUNxUF90NDJJOWdLNUx3Z2RiMHc6MA|Evaluation]]|| ||
||3:35 - 4:00 ||Future Directions  ||talk || Bruce Fischl, Lilla Zollei, Ender Konukoglu ||
||4:00 - 4:30||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||
||4:30 - 5:00 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||
||5:00 - 5:30 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||5:30 - 5:45 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
+||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||10:40 - 11:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||
||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 1|&do=get]] ||talk ||Lilla Zollei ||
||1:40 - 2:55||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||2:55 - 3:15 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dDNaOUNxUF90NDJJOWdLNUx3Z2RiMHc6MA|Evaluation]]|| ||
||3:15 - 3:45 ||Future Directions  ||talk || TBD ||
||3:45 - 4:15||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||
||4:15 - 4:45 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||
||4:45 - 5:15 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||5:15 - 5:30 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||