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⇤ ← Revision 10 as of 2014-10-24 01:20:48 →
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Editor: LouisVinke
Comment:
← Revision 17 as of 2017-02-21 15:12:04 → ⇥
Size: 3108
Editor: AllisonMoreau
Comment: regenerated stats file using v6.0
Deletions are marked like this. Additions are marked like this.
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[[FsTutorial/MultiModal|Back to Multimodal Top]]<<BR>>
[[FsTutorial/MultiModalDtiIndividual|Back to Multimodal DTI Integration]]		 [[FsTutorial/MultiModal_freeview|Back to Multimodal Top]]<<BR>>
||Return to [[FsTutorial/Diffusion_DtiIntegration|Diffusion and DTI Integration]] ||
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Contents of $TUTORIAL_DATA/multimodal/dti/fa.stats


Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats
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# Title Segmentation Statistics 
# 		 # Title Segmentation Statistics
#
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# cvs_version $Id: mri_segstats.c,v 1.49 2008/12/21 18:04:28 greve Exp $
# cmdline mri_segstats --seg /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz --ctab /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats 		# cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
# cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats
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# hostname crash # hostname nmrclass29
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# user greve # user nmrclass
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#
# SegVolFile /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz
# SegVolFileTimeStamp 2009/01/12 18:18:26
# ColorTable /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2008/12/31 11:38:16
# InVolFile fa.anat.mgh
# InVolFileTimeStamp 2009/01/13 14:55:17
# InVolFrame 0
# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId 		#
# SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz
# SegVolFileTimeStamp 2017/02/21 14:09:36
# ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2017/01/18 17:00:02
# InVolFile fa.nii
# InVolFileTimeStamp 2017/02/14 11:11:11
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 8
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
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# TableCol 3 ColHeader NVoxels  # TableCol 3 ColHeader NVoxels
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# TableCol 6 ColHeader Mean  # TableCol 6 ColHeader Mean
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# NRows 6
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251 934 934.0 CC_Posterior 0.7384 0.1885 0.2011 1.0562 0.8552
  2 3021 3193 3193.0 wm-lh-pericalcarine 0.3681 0.1476 0.0386 0.8042 0.7656
  3 3024 13986 13986.0 wm-lh-precentral 0.4209 0.1333 0.0582 0.8041 0.7460
  4 3030 8017 8017.0 wm-lh-superiortemporal 0.4225 0.1250 0.0795 0.7493 0.6698
  5 12 5531 5531.0 Left-Putamen 0.2673 0.1044 0.0733 0.6553 0.5819
  6 4 4140 4140.0 Left-Lateral-Ventricle 0.1904 0.1271 0.0222 0.8399 0.8177		 # NRows 6
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251 184 1472.0 CC_Posterior 0.5934 0.2358 0.0946 1.0749 0.9803
  2 3021 373 2984.0 wm-lh-pericalcarine 0.2573 0.1337 0.0181 0.7177 0.6996
  3 3024 1912 15296.0 wm-lh-precentral 0.3809 0.1504 0.0250 0.9488 0.9238
  4 3030 1042 8336.0 wm-lh-superiortemporal 0.4083 0.1290 0.0213 1.1030 1.0817
  5 12 572 4576.0 Left-Putamen 0.2406 0.1147 0.0469 0.6832 0.6362
  6 4 1045 8360.0 Left-Lateral-Ventricle 0.1207 0.1297 0.0108 1.0803 1.0695

Back to Multimodal Top

Return to Diffusion and DTI Integration

Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats 

# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
# cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats
# sysname  Linux
# hostname nmrclass29
# machine  x86_64
# user     nmrclass
# anatomy_type volume
#
# SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz
# SegVolFileTimeStamp  2017/02/21 14:09:36
# ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2017/01/18 17:00:02
# InVolFile  fa.nii
# InVolFileTimeStamp  2017/02/14 11:11:11
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 8
# TableCol  1 ColHeader Index
# TableCol  1 FieldName Index
# TableCol  1 Units     NA
# TableCol  2 ColHeader SegId
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 6
# NTableCols 10
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251       184     1472.0  CC_Posterior                       0.5934     0.2358     0.0946     1.0749     0.9803
  2 3021       373     2984.0  wm-lh-pericalcarine                0.2573     0.1337     0.0181     0.7177     0.6996
  3 3024      1912    15296.0  wm-lh-precentral                   0.3809     0.1504     0.0250     0.9488     0.9238
  4 3030      1042     8336.0  wm-lh-superiortemporal             0.4083     0.1290     0.0213     1.1030     1.0817
  5  12       572     4576.0  Left-Putamen                       0.2406     0.1147     0.0469     0.6832     0.6362
  6   4      1045     8360.0  Left-Lateral-Ventricle             0.1207     0.1297     0.0108     1.0803     1.0695

FsTutorial/MultiModalFaStats (last edited 2017-02-21 15:12:04 by AllisonMoreau)