Differences between revisions 13 and 16 (spanning 3 versions)
⇤ ← Revision 13 as of 2016-03-30 17:17:03 →
Size: 3135
Editor: LeeTirrell
Comment:
← Revision 16 as of 2017-02-16 16:04:35 → ⇥
Size: 3112
Editor: AllisonMoreau
Comment: updated stats to v6.0 results
Deletions are marked like this. Additions are marked like this.
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Contents of $TUTORIAL_DATA/multimodal/dti/fa.stats


Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats
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# Title Segmentation Statistics 
# 		 # Title Segmentation Statistics
#
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# cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats
# sysname Darwin
# hostname localzekes-mbp.partners.org		 # cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.m
gz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.
nii --sum fa.stats
# sysname Linux
# hostname nmrclass29
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# 
# SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz 
# SegVolFileTimeStamp 2015/04/08 14:41:59
# ColorTable /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt 
# ColorTableTimeStamp 2016/03/23 03:23:09 
# InVolFile fa.anat.mgh
# InVolFileTimeStamp 2016/03/30 16:00:57 
# InVolFrame 0 		 #
# SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz
# SegVolFileTimeStamp 2017/02/14 13:45:12
# ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2016/03/15 12:26:09
# InVolFile fa.nii
# InVolFileTimeStamp 2017/02/14 11:11:11
# InVolFrame 0
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# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index 
# TableCol 1 FieldName Index 
# TableCol 1 Units NA 
# TableCol 2 ColHeader SegId 		 # VoxelVolume_mm3 8
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
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# TableCol 3 ColHeader NVoxels  # TableCol 3 ColHeader NVoxels
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# TableCol 6 ColHeader Mean  # TableCol 6 ColHeader Mean
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# NRows 6 
# NTableCols 10 
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range  
  1  251 1142 1142.0 CC_Posterior 0.6097     0.2009 0.1089 1.0476 0.9387
  2 3021 2705 2705.0 wm-lh-pericalcarine 0.2609 0.1110 0.0431 0.6919 0.6488
  3 3024 14619 14619.0 wm-lh-precentral 0.3758 0.1267 0.0381 0.8125 0.7745
  4 3030 8511 8511.0 wm-lh-superiortemporal 0.3943 0.1108 0.0381 0.9062 0.8681
  5  12 5005 5005.0 Left-Putamen 0.2591 0.1035 0.0596 0.6036 0.5440
  6  4 7796 7796.0 Left-Lateral-Ventricle 0.1352 0.1201 0.0201 0.9527 0.9325 		# NRows 6
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251 183 1464.0 CC_Posterior 0.5944 0.2361 0.0946 1.0749 0.9803
  2 3021 374 2992.0 wm-lh-pericalcarine 0.2584 0.1336 0.0181 0.7177 0.6996
  3 3024  1912 15296.0 wm-lh-precentral 0.3808 0.1504 0.0250 0.9488 0.9238
  4 3030 1043 8344.0 wm-lh-superiortemporal 0.4084 0.1292 0.0213 1.1030 1.0817
  5 12 573 4584.0 Left-Putamen 0.2414 0.1149 0.0469 0.6832 0.6362
  6 4 1052 8416.0 Left-Lateral-Ventricle 0.1197 0.1281 0.0108 1.0803 1.0695

Back to Multimodal Top

Return to Diffusion and DTI Integration

Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats 

# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.120 2016/03/02 22:30:05 greve Exp $
# cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.m
gz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.
nii --sum fa.stats
# sysname  Linux
# hostname nmrclass29
# machine  x86_64
# user     nmrclass
# anatomy_type volume
#
# SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz
# SegVolFileTimeStamp  2017/02/14 13:45:12
# ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2016/03/15 12:26:09
# InVolFile  fa.nii
# InVolFileTimeStamp  2017/02/14 11:11:11
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 8
# TableCol  1 ColHeader Index
# TableCol  1 FieldName Index
# TableCol  1 Units     NA
# TableCol  2 ColHeader SegId
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 6
# NTableCols 10
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251       183     1464.0  CC_Posterior                       0.5944     0.2361     0.0946     1.0749     0.9803
  2 3021       374     2992.0  wm-lh-pericalcarine                0.2584     0.1336     0.0181     0.7177     0.6996
  3 3024      1912    15296.0  wm-lh-precentral                   0.3808     0.1504     0.0250     0.9488     0.9238
  4 3030      1043     8344.0  wm-lh-superiortemporal             0.4084     0.1292     0.0213     1.1030     1.0817
  5  12       573     4584.0  Left-Putamen                       0.2414     0.1149     0.0469     0.6832     0.6362
  6   4      1052     8416.0  Left-Lateral-Ventricle             0.1197     0.1281     0.0108     1.0803     1.0695

FsTutorial/MultiModalFaStats (last edited 2017-02-21 15:12:04 by AllisonMoreau)