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← Revision 17 as of 2017-02-21 15:12:04 ⇥
Size: 3108
Comment: regenerated stats file using v6.0
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| ## page was renamed from FsTutorial/MultiModalFaStats_tktools ## page was renamed from FsTutorial/MultiModalFaStats [[FsTutorial/MultiModal_freeview|Back to Multimodal Top]]<<BR>> ||Return to [[FsTutorial/Diffusion_DtiIntegration|Diffusion and DTI Integration]] || Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats |
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| # Title Segmentation Statistics # |
# Title Segmentation Statistics # |
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| # cvs_version $Id: mri_segstats.c,v 1.49 2008/12/21 18:04:28 greve Exp $ # cmdline mri_segstats --seg /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz --ctab /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats |
# cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats |
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| # hostname crash | # hostname nmrclass29 |
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| # user greve | # user nmrclass |
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| # # SegVolFile /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz # SegVolFileTimeStamp 2009/01/12 18:18:26 # ColorTable /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt # ColorTableTimeStamp 2008/12/31 11:38:16 # InVolFile fa.anat.mgh # InVolFileTimeStamp 2009/01/13 14:55:17 # InVolFrame 0 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId |
# # SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz # SegVolFileTimeStamp 2017/02/21 14:09:36 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2017/01/18 17:00:02 # InVolFile fa.nii # InVolFileTimeStamp 2017/02/14 11:11:11 # InVolFrame 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 8 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId |
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| # TableCol 3 ColHeader NVoxels | # TableCol 3 ColHeader NVoxels |
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| # TableCol 6 ColHeader Mean | # TableCol 6 ColHeader Mean |
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| # NRows 6 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 251 934 934.0 CC_Posterior 0.7519 0.2226 0.1015 1.1109 1.0094 2 3021 3193 3193.0 wm-lh-pericalcarine 0.3848 0.1701 0.0319 0.8224 0.7905 3 3024 13986 13986.0 wm-lh-precentral 0.4140 0.1716 0.0274 0.8905 0.8631 4 3030 8017 8017.0 wm-lh-superiortemporal 0.4163 0.1566 0.0398 0.8076 0.7678 5 12 5531 5531.0 Left-Putamen 0.2689 0.1366 0.0446 0.8242 0.7796 6 4 4140 4140.0 Left-Lateral-Ventricle 0.2009 0.1900 0.0114 1.0402 1.0288 |
# NRows 6 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 251 184 1472.0 CC_Posterior 0.5934 0.2358 0.0946 1.0749 0.9803 2 3021 373 2984.0 wm-lh-pericalcarine 0.2573 0.1337 0.0181 0.7177 0.6996 3 3024 1912 15296.0 wm-lh-precentral 0.3809 0.1504 0.0250 0.9488 0.9238 4 3030 1042 8336.0 wm-lh-superiortemporal 0.4083 0.1290 0.0213 1.1030 1.0817 5 12 572 4576.0 Left-Putamen 0.2406 0.1147 0.0469 0.6832 0.6362 6 4 1045 8360.0 Left-Lateral-Ventricle 0.1207 0.1297 0.0108 1.0803 1.0695 |
Return to Diffusion and DTI Integration |
Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats
# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats # sysname Linux # hostname nmrclass29 # machine x86_64 # user nmrclass # anatomy_type volume # # SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz # SegVolFileTimeStamp 2017/02/21 14:09:36 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2017/01/18 17:00:02 # InVolFile fa.nii # InVolFileTimeStamp 2017/02/14 11:11:11 # InVolFrame 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 8 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader Mean # TableCol 6 FieldName Intensity Mean # TableCol 6 Units unknown # TableCol 7 ColHeader StdDev # TableCol 7 FieldName Itensity StdDev # TableCol 7 Units unknown # TableCol 8 ColHeader Min # TableCol 8 FieldName Intensity Min # TableCol 8 Units unknown # TableCol 9 ColHeader Max # TableCol 9 FieldName Intensity Max # TableCol 9 Units unknown # TableCol 10 ColHeader Range # TableCol 10 FieldName Intensity Range # TableCol 10 Units unknown # NRows 6 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 251 184 1472.0 CC_Posterior 0.5934 0.2358 0.0946 1.0749 0.9803 2 3021 373 2984.0 wm-lh-pericalcarine 0.2573 0.1337 0.0181 0.7177 0.6996 3 3024 1912 15296.0 wm-lh-precentral 0.3809 0.1504 0.0250 0.9488 0.9238 4 3030 1042 8336.0 wm-lh-superiortemporal 0.4083 0.1290 0.0213 1.1030 1.0817 5 12 572 4576.0 Left-Putamen 0.2406 0.1147 0.0469 0.6832 0.6362 6 4 1045 8360.0 Left-Lateral-Ventricle 0.1207 0.1297 0.0108 1.0803 1.0695