Differences between revisions 3 and 13 (spanning 10 versions)
⇤ ← Revision 3 as of 2009-01-13 16:52:53 →
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Editor: crash
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← Revision 13 as of 2016-03-30 17:17:03 → ⇥
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Editor: LeeTirrell
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Deletions are marked like this. Additions are marked like this.
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## page was renamed from FsTutorial/MultiModalFaStats_tktools
## page was renamed from FsTutorial/MultiModalFaStats
[[FsTutorial/MultiModal_freeview|Back to Multimodal Top]]<<BR>>
||Return to [[FsTutorial/Diffusion_DtiIntegration|Diffusion and DTI Integration]] ||

Contents of $TUTORIAL_DATA/multimodal/dti/fa.stats
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# cvs_version $Id: mri_segstats.c,v 1.49 2008/12/21 18:04:28 greve Exp $
# cmdline mri_segstats --seg /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz --ctab /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats
# sysname Linux
# hostname crash		 # cvs_version $Id: mri_segstats.c,v 1.120 2016/03/02 22:30:05 greve Exp $
# cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats
# sysname Darwin
# hostname localzekes-mbp.partners.org
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# user greve # user nmrclass
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# SegVolFile /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz
# SegVolFileTimeStamp 2009/01/12 18:18:26
# ColorTable /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2008/12/31 11:38:16 		 # SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz
# SegVolFileTimeStamp 2015/04/08 14:41:59
# ColorTable /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2016/03/23 03:23:09
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# InVolFileTimeStamp 2009/01/13 14:55:17 # InVolFileTimeStamp 2016/03/30 16:00:57
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# Only reporting non-empty segmentations
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# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251 934 934.0 CC_Posterior 0.7519 0.2226 0.1015 1.1109 1.0094
  2 3021 3193 3193.0 wm-lh-pericalcarine 0.3848 0.1701 0.0319 0.8224 0.7905
  3 3024 13986 13986.0 wm-lh-precentral 0.4140 0.1716 0.0274 0.8905 0.8631
  4 3030 8017 8017.0 wm-lh-superiortemporal 0.4163 0.1566 0.0398 0.8076 0.7678
  5 12 5531 5531.0 Left-Putamen 0.2689 0.1366 0.0446 0.8242 0.7796
  6 4 4140 4140.0 Left-Lateral-Ventricle 0.2009 0.1900 0.0114 1.0402 1.0288 		# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251 1142 1142.0 CC_Posterior 0.6097 0.2009 0.1089 1.0476 0.9387
  2 3021 2705 2705.0 wm-lh-pericalcarine 0.2609 0.1110 0.0431 0.6919 0.6488
  3 3024 14619 14619.0 wm-lh-precentral 0.3758 0.1267 0.0381 0.8125 0.7745
  4 3030 8511 8511.0 wm-lh-superiortemporal 0.3943 0.1108 0.0381 0.9062 0.8681
  5 12 5005 5005.0 Left-Putamen 0.2591 0.1035 0.0596 0.6036 0.5440
  6 4 7796 7796.0 Left-Lateral-Ventricle 0.1352 0.1201 0.0201 0.9527 0.9325

Back to Multimodal Top

Return to Diffusion and DTI Integration

Contents of $TUTORIAL_DATA/multimodal/dti/fa.stats 

# Title Segmentation Statistics 
# 
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.120 2016/03/02 22:30:05 greve Exp $
# cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats 
# sysname  Darwin
# hostname localzekes-mbp.partners.org
# machine  x86_64
# user     nmrclass
# anatomy_type volume
# 
# SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz 
# SegVolFileTimeStamp  2015/04/08 14:41:59 
# ColorTable /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt 
# ColorTableTimeStamp 2016/03/23 03:23:09 
# InVolFile  fa.anat.mgh 
# InVolFileTimeStamp  2016/03/30 16:00:57 
# InVolFrame 0 
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1 
# TableCol  1 ColHeader Index 
# TableCol  1 FieldName Index 
# TableCol  1 Units     NA 
# TableCol  2 ColHeader SegId 
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels 
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean 
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 6 
# NTableCols 10 
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range  
  1  251      1142     1142.0  CC_Posterior                       0.6097     0.2009     0.1089     1.0476     0.9387 
  2 3021      2705     2705.0  wm-lh-pericalcarine                0.2609     0.1110     0.0431     0.6919     0.6488 
  3 3024     14619    14619.0  wm-lh-precentral                   0.3758     0.1267     0.0381     0.8125     0.7745 
  4 3030      8511     8511.0  wm-lh-superiortemporal             0.3943     0.1108     0.0381     0.9062     0.8681 
  5   12      5005     5005.0  Left-Putamen                       0.2591     0.1035     0.0596     0.6036     0.5440 
  6    4      7796     7796.0  Left-Lateral-Ventricle             0.1352     0.1201     0.0201     0.9527     0.9325

FsTutorial/MultiModalFaStats (last edited 2017-02-21 15:12:04 by AllisonMoreau)