Differences between revisions 5 and 15 (spanning 10 versions)
⇤ ← Revision 5 as of 2009-01-13 16:54:41 →
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Editor: crash
Comment:
← Revision 15 as of 2016-09-27 17:38:48 → ⇥
Size: 3130
Editor: AndrewHoopes
Comment: changed file output
Deletions are marked like this. Additions are marked like this.
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## page was renamed from FsTutorial/MultiModalFaStats_tktools
## page was renamed from FsTutorial/MultiModalFaStats
[[FsTutorial/MultiModal_freeview|Back to Multimodal Top]]<<BR>>
||Return to [[FsTutorial/Diffusion_DtiIntegration|Diffusion and DTI Integration]] ||

Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats
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# cvs_version $Id: mri_segstats.c,v 1.49 2008/12/21 18:04:28 greve Exp $
# cmdline mri_segstats --seg /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz --ctab /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats
# sysname Linux
# hostname crash		 # cvs_version $Id: mri_segstats.c,v 1.120 2016/03/02 22:30:05 greve Exp $
# cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats
# sysname Darwin
# hostname breck
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# user greve # user nmrclass
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# SegVolFile /homes/4/greve/subjects/M87102113.v4/mri/wmparc.mgz
# SegVolFileTimeStamp 2009/01/12 18:18:26
# ColorTable /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2008/12/31 11:38:16
# InVolFile fa.anat.mgh
# InVolFileTimeStamp 2009/01/13 14:55:17 		# SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz
# SegVolFileTimeStamp 2016/09/27 17:35:42
# ColorTable /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2016/03/23 03:23:09
# InVolFile fa.nii
# InVolFileTimeStamp 2015/04/08 14:42:49
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# VoxelVolume_mm3 1 # Only reporting non-empty segmentations
# VoxelVolume_mm3 8
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# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251 934 934.0 CC_Posterior 0.7519 0.2226 0.1015 1.1109 1.0094
  2 3021 3193 3193.0 wm-lh-pericalcarine 0.3848 0.1701 0.0319 0.8224 0.7905
  3 3024 13986 13986.0 wm-lh-precentral 0.4140 0.1716 0.0274 0.8905 0.8631
  4 3030 8017 8017.0 wm-lh-superiortemporal 0.4163 0.1566 0.0398 0.8076 0.7678
  5 12 5531 5531.0 Left-Putamen 0.2689 0.1366 0.0446 0.8242 0.7796
  6 4 4140 4140.0 Left-Lateral-Ventricle 0.2009 0.1900 0.0114 1.0402 1.0288 		# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 251 114 912.0 CC_Posterior 0.6130 0.2308 0.0946 1.0749 0.9803
  2 3021 347 2776.0 wm-lh-pericalcarine 0.2702 0.1309 0.0181 0.7177 0.6996
  3 3024 1840 14720.0 wm-lh-precentral 0.3853 0.1491 0.0285 0.9488 0.9203
  4 3030 1054 8432.0 wm-lh-superiortemporal 0.4126 0.1256 0.0213 1.1030 1.0817
  5 12 622 4976.0 Left-Putamen 0.2535 0.1183 0.0469 0.6283 0.5814
  6 4 992 7936.0 Left-Lateral-Ventricle 0.1229 0.1394 0.0108 1.1163 1.1055

Back to Multimodal Top

Return to Diffusion and DTI Integration

Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats 

# Title Segmentation Statistics 
# 
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.120 2016/03/02 22:30:05 greve Exp $
# cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats 
# sysname  Darwin
# hostname breck
# machine  x86_64
# user     nmrclass
# anatomy_type volume
# 
# SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz 
# SegVolFileTimeStamp  2016/09/27 17:35:42 
# ColorTable /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt 
# ColorTableTimeStamp 2016/03/23 03:23:09 
# InVolFile  fa.nii 
# InVolFileTimeStamp  2015/04/08 14:42:49 
# InVolFrame 0 
# Only reporting non-empty segmentations
# VoxelVolume_mm3 8 
# TableCol  1 ColHeader Index 
# TableCol  1 FieldName Index 
# TableCol  1 Units     NA 
# TableCol  2 ColHeader SegId 
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels 
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean 
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 6 
# NTableCols 10 
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range  
  1 251       114      912.0  CC_Posterior                       0.6130     0.2308     0.0946     1.0749     0.9803 
  2 3021       347     2776.0  wm-lh-pericalcarine                0.2702     0.1309     0.0181     0.7177     0.6996 
  3 3024      1840    14720.0  wm-lh-precentral                   0.3853     0.1491     0.0285     0.9488     0.9203 
  4 3030      1054     8432.0  wm-lh-superiortemporal             0.4126     0.1256     0.0213     1.1030     1.0817 
  5  12       622     4976.0  Left-Putamen                       0.2535     0.1183     0.0469     0.6283     0.5814 
  6   4       992     7936.0  Left-Lateral-Ventricle             0.1229     0.1394     0.0108     1.1163     1.1055

FsTutorial/MultiModalFaStats (last edited 2017-02-21 15:12:04 by AllisonMoreau)