Differences between revisions 4 and 5
Deletions are marked like this. Additions are marked like this.
Line 207: Line 207:
volume ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
1 1408 4077 4382 57
2 1246 4780 4049 186
3 609 4057 2990 121
4 843 2928 2236 146
5 1614 4003 3873 232 		Measure:volume ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 1408.0 4077.0 4382.0 57.0
1 1246.0 4780.0 4049.0 186.0
2 609.0 4057.0 2990.0 121.0
3 843.0 2928.0 2236.0 146.0
4 1614.0 4003.0 3873.0 232.0
Line 220: Line 220:
mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
1 181.301 58.9122 82.4339 16.8604
2 162.607 70.9748 78.5134 -1.1652
3 264.136 38.3964 73.2994 -42.7581
4 182.772 74.2692 97.7955 31.554
5 118.749 57.6731 96.149 10.9517 		Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 181.3009 58.9122 82.4339 16.8604
1 162.6065 70.9748 78.5134 -1.1652
2 264.1356 38.3964 73.2994 -42.7581
3 182.7722 74.2692 97.7955 31.554
4 118.7494 57.6731 96.149 10.9517
Line 232: Line 232:
mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
1 198.242 105.753 107.189 77.5613
2 232.299 108.058 121.953 37.9277
3 336.567 111.259 136.462 81.3814
4 196.11 81.4932 127.586 77.9514
5 120.514 91.797 113.762 39.2072

}}}
Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 198.2415 105.7526 107.1893 77.5613
1 232.2992 108.0577 121.9527 37.9277
2 336.5665 111.2593 136.4619 81.3814
3 196.1099 81.4932 127.5857 77.9514
4 120.5139 91.797 113.7618 39.2072

}}}

Contents

  1. ces.bb.stats
  2. ces.abs-masked.bb.stats
  3. ces.pos-masked.bb.stats
  4. ces.pos-masked.vol.stats
  5. ces.abs-masked.mean.stats
  6. ces.pos-masked.mean.stats

ces.bb.stats

# Title Segmentation Statistics 
# 
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.49 2008/12/21 18:04:28 greve Exp $
# cmdline mri_segstats --seg /homes/4/greve/subjects/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i fbirn-101/ces.anat.bb.mgh --sum fbirn-101/ces.bb.stats 
# sysname  Linux
# hostname crash
# machine  x86_64
# user     greve
# anatomy_type volume
# 
# SegVolFile /homes/4/greve/subjects/fbirn-anat-101.v4/mri/aparc+aseg.mgz 
# SegVolFileTimeStamp  2009/01/09 16:21:30 
# ColorTable /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt 
# ColorTableTimeStamp 2008/12/31 11:38:16 
# InVolFile  fbirn-101/ces.anat.bb.mgh 
# InVolFileTimeStamp  2009/01/12 17:18:36 
# InVolFrame 0 
# VoxelVolume_mm3 1 
# TableCol  1 ColHeader Index 
# TableCol  1 FieldName Index 
# TableCol  1 Units     NA 
# TableCol  2 ColHeader SegId 
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels 
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean 
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 4 
# NTableCols 10 
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range  
  1 1021      2586     2586.0  ctx-lh-pericalcarine             112.9913   146.7164   -64.4940   713.9155   778.4095 
  2 1022     12413    12413.0  ctx-lh-postcentral                25.1984    75.2930  -232.6694   461.8479   694.5173 
  3 1030     15147    15147.0  ctx-lh-superiortemporal           27.9277    71.8605  -143.5521   461.8479   605.4000 
  4  17      4385     4385.0  Left-Hippocampus                   1.2871    23.2438  -113.9432   116.7186   230.6618

ces.abs-masked.bb.stats

# Title Segmentation Statistics 
# 
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.49 2008/12/21 18:04:28 greve Exp $
# cmdline mri_segstats --seg /homes/4/greve/subjects/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i fbirn-101/ces.anat.bb.mgh --sum fbirn-101/ces.abs-masked.bb.stats --mask fbirn-101/sig.anat.bb.mgh --maskthresh 2 --masksign abs 
# sysname  Linux
# hostname crash
# machine  x86_64
# user     greve
# anatomy_type volume
# 
# SegVolFile /homes/4/greve/subjects/fbirn-anat-101.v4/mri/aparc+aseg.mgz 
# SegVolFileTimeStamp  2009/01/09 16:21:30 
# ColorTable /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt 
# ColorTableTimeStamp 2008/12/31 11:38:16 
# MaskVolFile  fbirn-101/sig.anat.bb.mgh 
#   MaskVolFileTimeStamp  2009/01/12 17:18:34 
#   MaskThresh 2.000000 
#   MaskSign   abs 
#   MaskFrame  0 
#   MaskInvert 0 
# InVolFile  fbirn-101/ces.anat.bb.mgh 
# InVolFileTimeStamp  2009/01/12 17:18:36 
# InVolFrame 0 
# VoxelVolume_mm3 1 
# TableCol  1 ColHeader Index 
# TableCol  1 FieldName Index 
# TableCol  1 Units     NA 
# TableCol  2 ColHeader SegId 
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels 
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean 
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 4 
# NTableCols 10 
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range  
  1 1021      1512     1512.0  ctx-lh-pericalcarine             181.3009   158.2677   -64.4940   713.9155   778.4095 
  2 1022      5646     5646.0  ctx-lh-postcentral                58.9122    98.6236  -232.6694   461.8479   694.5173 
  3 1030      5203     5203.0  ctx-lh-superiortemporal           82.4339    96.9492  -143.5521   461.8479   605.4000 
  4  17       116      116.0  Left-Hippocampus                  16.8604    64.3484  -113.9432   116.7186   230.6618

ces.pos-masked.bb.stats

# Title Segmentation Statistics 
# 
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.49 2008/12/21 18:04:28 greve Exp $
# cmdline mri_segstats --seg /homes/4/greve/subjects/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i fbirn-101/ces.anat.bb.mgh --sum fbirn-101/ces.pos-masked.bb.stats --mask fbirn-101/sig.anat.bb.mgh --maskthresh 2 --masksign pos 
# sysname  Linux
# hostname crash
# machine  x86_64
# user     greve
# anatomy_type volume
# 
# SegVolFile /homes/4/greve/subjects/fbirn-anat-101.v4/mri/aparc+aseg.mgz 
# SegVolFileTimeStamp  2009/01/09 16:21:30 
# ColorTable /space/crash/1/users/greve/freesurferx86/FreeSurferColorLUT.txt 
# ColorTableTimeStamp 2008/12/31 11:38:16 
# MaskVolFile  fbirn-101/sig.anat.bb.mgh 
#   MaskVolFileTimeStamp  2009/01/12 17:18:34 
#   MaskThresh 2.000000 
#   MaskSign   pos 
#   MaskFrame  0 
#   MaskInvert 0 
# InVolFile  fbirn-101/ces.anat.bb.mgh 
# InVolFileTimeStamp  2009/01/12 17:18:36 
# InVolFrame 0 
# VoxelVolume_mm3 1 
# TableCol  1 ColHeader Index 
# TableCol  1 FieldName Index 
# TableCol  1 Units     NA 
# TableCol  2 ColHeader SegId 
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels 
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean 
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 4 
# NTableCols 10 
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range  
  1 1021      1408     1408.0  ctx-lh-pericalcarine             198.2415   150.7281    32.1526   713.9155   681.7629 
  2 1022      4077     4077.0  ctx-lh-postcentral               105.7526    71.4035    19.5321   461.8479   442.3158 
  3 1030      4382     4382.0  ctx-lh-superiortemporal          107.1893    84.5353    25.4251   461.8479   436.4228 
  4  17        57       57.0  Left-Hippocampus                  77.5613    28.2381    43.2457   116.7186    73.4729

ces.pos-masked.vol.stats

Measure:volume  ctx-lh-pericalcarine    ctx-lh-postcentral      ctx-lh-superiortemporal Left-Hippocampus
0       1408.0  4077.0  4382.0  57.0
1       1246.0  4780.0  4049.0  186.0
2       609.0   4057.0  2990.0  121.0
3       843.0   2928.0  2236.0  146.0
4       1614.0  4003.0  3873.0  232.0

ces.abs-masked.mean.stats

Measure:mean    ctx-lh-pericalcarine    ctx-lh-postcentral      ctx-lh-superiortemporal Left-Hippocampus
0       181.3009        58.9122 82.4339 16.8604
1       162.6065        70.9748 78.5134 -1.1652
2       264.1356        38.3964 73.2994 -42.7581
3       182.7722        74.2692 97.7955 31.554
4       118.7494        57.6731 96.149  10.9517

ces.pos-masked.mean.stats

Measure:mean    ctx-lh-pericalcarine    ctx-lh-postcentral      ctx-lh-superiortemporal Left-Hippocampus
0       198.2415        105.7526        107.1893        77.5613
1       232.2992        108.0577        121.9527        37.9277
2       336.5665        111.2593        136.4619        81.3814
3       196.1099        81.4932 127.5857        77.9514
4       120.5139        91.797  113.7618        39.2072

FsTutorial/MultiModalFmriIndividual/BbStats (last edited 2017-03-23 13:37:38 by AndrewHoopes)