ces.bb.stats
# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
# cmdline mri_segstats --seg /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.bb.stats
# sysname Linux
# hostname qdec
# machine x86_64
# user nmrclass
# anatomy_type volume
#
# SegVolFile /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz
# SegVolFileTimeStamp 2011/12/19 13:53:31
# ColorTable /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2013/05/13 20:31:02
# InVolFile ces.anat.bb.mgh
# InVolFileTimeStamp 2014/10/22 17:24:29
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
# TableCol 2 FieldName Segmentation Id
# TableCol 2 Units NA
# TableCol 3 ColHeader NVoxels
# TableCol 3 FieldName Number of Voxels
# TableCol 3 Units unitless
# TableCol 4 ColHeader Volume_mm3
# TableCol 4 FieldName Volume
# TableCol 4 Units mm^3
# TableCol 5 ColHeader StructName
# TableCol 5 FieldName Structure Name
# TableCol 5 Units NA
# TableCol 6 ColHeader Mean
# TableCol 6 FieldName Intensity Mean
# TableCol 6 Units unknown
# TableCol 7 ColHeader StdDev
# TableCol 7 FieldName Itensity StdDev
# TableCol 7 Units unknown
# TableCol 8 ColHeader Min
# TableCol 8 FieldName Intensity Min
# TableCol 8 Units unknown
# TableCol 9 ColHeader Max
# TableCol 9 FieldName Intensity Max
# TableCol 9 Units unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units unknown
# NRows 4
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
1 1021 2586 2586.0 ctx-lh-pericalcarine 112.9635 146.7148 -64.4940 713.9155 778.4095
2 1022 12413 12413.0 ctx-lh-postcentral 25.1931 75.2689 -232.6694 461.8479 694.5173
3 1030 15147 15147.0 ctx-lh-superiortemporal 27.9571 71.8730 -143.5521 461.8479 605.4000
4 17 4385 4385.0 Left-Hippocampus 1.2777 23.2404 -113.9432 116.7186 230.6618
ces.abs-masked.bb.stats
# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
# cmdline mri_segstats --seg /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.abs-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign abs
# sysname Linux
# hostname qdec
# machine x86_64
# user nmrclass
# anatomy_type volume
#
# SegVolFile /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz
# SegVolFileTimeStamp 2011/12/19 13:53:31
# ColorTable /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2013/05/13 20:31:02
# MaskVolFile sig.anat.bb.mgh
# MaskVolFileTimeStamp 2014/10/22 17:34:54
# MaskThresh 2.000000
# MaskSign abs
# MaskFrame 0
# MaskInvert 0
# InVolFile ces.anat.bb.mgh
# InVolFileTimeStamp 2014/10/22 17:24:29
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
# TableCol 2 FieldName Segmentation Id
# TableCol 2 Units NA
# TableCol 3 ColHeader NVoxels
# TableCol 3 FieldName Number of Voxels
# TableCol 3 Units unitless
# TableCol 4 ColHeader Volume_mm3
# TableCol 4 FieldName Volume
# TableCol 4 Units mm^3
# TableCol 5 ColHeader StructName
# TableCol 5 FieldName Structure Name
# TableCol 5 Units NA
# TableCol 6 ColHeader Mean
# TableCol 6 FieldName Intensity Mean
# TableCol 6 Units unknown
# TableCol 7 ColHeader StdDev
# TableCol 7 FieldName Itensity StdDev
# TableCol 7 Units unknown
# TableCol 8 ColHeader Min
# TableCol 8 FieldName Intensity Min
# TableCol 8 Units unknown
# TableCol 9 ColHeader Max
# TableCol 9 FieldName Intensity Max
# TableCol 9 Units unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units unknown
# NRows 4
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
1 1021 1512 1512.0 ctx-lh-pericalcarine 181.2534 158.2858 -64.4940 713.9155 778.4095
2 1022 5646 5646.0 ctx-lh-postcentral 58.9172 98.5777 -232.6694 461.8479 694.5173
3 1030 5203 5203.0 ctx-lh-superiortemporal 82.5216 96.9229 -143.5521 461.8479 605.4000
4 17 116 116.0 Left-Hippocampus 16.8604 64.3484 -113.9432 116.7186 230.6618
ces.pos-masked.bb.stats
# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
# cmdline mri_segstats --seg /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.pos-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign pos
# sysname Linux
# hostname qdec
# machine x86_64
# user nmrclass
# anatomy_type volume
#
# SegVolFile /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz
# SegVolFileTimeStamp 2011/12/19 13:53:31
# ColorTable /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2013/05/13 20:31:02
# MaskVolFile sig.anat.bb.mgh
# MaskVolFileTimeStamp 2014/10/22 17:34:54
# MaskThresh 2.000000
# MaskSign pos
# MaskFrame 0
# MaskInvert 0
# InVolFile ces.anat.bb.mgh
# InVolFileTimeStamp 2014/10/22 17:24:29
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
# TableCol 2 FieldName Segmentation Id
# TableCol 2 Units NA
# TableCol 3 ColHeader NVoxels
# TableCol 3 FieldName Number of Voxels
# TableCol 3 Units unitless
# TableCol 4 ColHeader Volume_mm3
# TableCol 4 FieldName Volume
# TableCol 4 Units mm^3
# TableCol 5 ColHeader StructName
# TableCol 5 FieldName Structure Name
# TableCol 5 Units NA
# TableCol 6 ColHeader Mean
# TableCol 6 FieldName Intensity Mean
# TableCol 6 Units unknown
# TableCol 7 ColHeader StdDev
# TableCol 7 FieldName Itensity StdDev
# TableCol 7 Units unknown
# TableCol 8 ColHeader Min
# TableCol 8 FieldName Intensity Min
# TableCol 8 Units unknown
# TableCol 9 ColHeader Max
# TableCol 9 FieldName Intensity Max
# TableCol 9 Units unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units unknown
# NRows 4
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
1 1021 1408 1408.0 ctx-lh-pericalcarine 198.1904 150.7542 32.1526 713.9155 681.7629
2 1022 4078 4078.0 ctx-lh-postcentral 105.7220 71.3426 19.5321 461.8479 442.3158
3 1030 4384 4384.0 ctx-lh-superiortemporal 107.2234 84.5133 25.4251 461.8479 436.4228
4 17 57 57.0 Left-Hippocampus 77.5613 28.2381 43.2457 116.7186 73.4729
ces.pos-masked.vol.stats
Measure:volume ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 1408.0 4077.0 4382.0 57.0
1 1246.0 4780.0 4049.0 186.0
2 609.0 4057.0 2990.0 121.0
3 843.0 2928.0 2236.0 146.0
4 1614.0 4003.0 3873.0 232.0
ces.abs-masked.mean.stats
Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 181.2534 58.9172 82.5216 16.8604
1 162.6065 70.9748 78.5134 -1.1652
2 264.1356 38.3964 73.2994 -42.7581
3 182.7722 74.2692 97.7955 31.554
4 118.7494 57.6731 96.149 10.9517
ces.pos-masked.mean.stats
Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 198.2415 105.722 107.2234 77.5613
1 232.2992 108.0577 121.9527 37.9277
2 336.5665 111.2593 136.4619 81.3814
3 196.1099 81.4932 127.5857 77.9514
4 120.5139 91.797 113.7618 39.2072
FsTutorial/MultiModalFmriIndividual/BbStats (last edited 2017-03-23 13:37:38 by AndrewHoopes)