Diff for "FsTutorial/Nov2013CourseSchedule"

Differences between revisions 2 and 34 (spanning 32 versions)

FreeSurfer Course, November 4 - 6, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

8:00 - 9:30am Registration Desk Open

Monday, Nov 4th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	tutorial	Maritza Ebling
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:00	Analyzing the Individual Subject	talk	Doug Greve
11:00 - 11:20	break
11:20 - 12:05	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
12:05 - 1:00	Lunch (Suggestions for where to eat)	--	--
1:00 - 1:30	Freeview/Tksurfer demonstration	demo	Doug Greve
1:30 - 2:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:00 - 2:30	FreeSurfer Troubleshooting	talk	Bruce Fischl
2:30 - 2:50	break
2:50 - 3:50	Quality Checking a Recon	demo	Allison Stevens
3:50 - 5:00	Troubleshooting Tutorial	tutorial	staff
5:00 - 5:15	Question and Answer Session (Answers to online questions here)	talk	staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, Nov 5th - Group Analysis / ROI Analysis / Multimodal

Time	Title	Type	Lecturer
9:00 - 9:40	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
9:40 - 10:20	Group Analysis	talk	Eugenio Iglesias
10:20 - 10:40	break
10:40 - 11:20	Group Analysis Tutorial	tutorial	staff
11:20 - 11:40	Multiple Comparisons	talk	Eugenio Iglesias
11:40 - 12:00	QDEC demonstration	demo	Eugenio Iglesias
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Multiple Comparisons Tutorial	tutorial	staff
1:00 - 2:00	QDEC Tutorial	tutorial	staff
2:00 - 3:00	ROI Analysis	talk	Doug Greve
3:00 - 3:20	break
3:20 - 3:50	ROI Analysis Tutorial	tutorial	staff
3:50 - 4:20	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
4:20 - 5:00	Longitudinal Tutorial	tutorial	staff
5:00 - 5:15	Question and Answer Session (Answers to online questions here)	talk	staff

Wednesday, Nov 6th - Diffusion / Multimodal / Longitudinal / Future Directions / Q&A

Time	Title	Type	Lecturer
9:00 - 9:30	Multi-Modal Integration, Part 1	talk	Doug Greve
9:30 - 10:00	Multi-Modal Integration Tutorial, Part 1	tutorial	staff
10:00 - 10:40	Introduction to Diffusion MRI	talk	Anastasia Yendiki
10:40 - 11:00	break
11:00 - 11:30	Diffusion Processing Tutorial	tutorial	staff
11:30 - 12:00	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
12:00 - 1:00	Lunch	--	--
1:00 - 1:45	Tracula Tutorial	tutorial	staff
1:45 - 2:15	Multi-Modal Integration, Part 2	talk	Doug Greve
2:15 - 3:00	Multi-Modal Integration Tutorial, Part 2	tutorial	staff
3:00 - 3:20	break & Evaluation
3:20 - 3:50	optional technical talk - MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
3:50 - 4:20	optional technical talk - Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
4:20 - 4:45	optional technical talk - Registration Methods	talk	Lilla Zollei
4:45 - 5:15	Future Directions	talk	Bruce Fischl, Lilla Zollei, Ender Konukoglu
5:15 - 5:30	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

FsTutorial/Nov2013CourseSchedule (last edited 2017-09-26 11:35:14 by MorganFogarty)

-  ⇤ ← Revision 2 as of 2013-06-26 10:21:07 → 
  Size: 6982
  Editor: AllisonStevens
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+   ← Revision 34 as of 2017-09-26 11:35:14 → ⇥
  Size: 7810
  Editor: MorganFogarty
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-Deletions are marked like this.
+Additions are marked like this.
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-##'''Fill out the Course evaluation [[ https://docs.google.com/spreadsheet/viewform?formkey=dF9vNnlCUHVuQ1BsUmREdDRwVnBHS0E6MA|here]]!!!'''
+== 8:00 - 9:30am Registration Desk Open ==
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-=== Monday, Nov 4th - Introduction / Single Subject / Registration / Troubleshooting ===
+=== Monday, Nov 4th - Introduction / Single Subject Analysis /Troubleshooting ===
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+Line 13:
-||8:30 - 10:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Maritza Ebling ||
||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Melanie Ganz ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Doug Greve ||
||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
||11:30 - 11:50 ||'''break''' || || ||
||11:50 - 12:10 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||
||12:20 - 1:20 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||''12:35 - 1:20'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||
||11:10 - 11:40 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||11:40 - 12:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
||1:20 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk ||Allison Stevens ||
||2:00 - 3:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||3:00 - 3:20 ||'''break''' || || ||
||3:20 - 3:40 ||Troubleshooting Demonstration || demo || Allison Stevens ||
||3:40 - 4:40 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Maritza Ebling ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt.pptx|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
||9:15 - 9:30 ||'''break''' || || ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Bruce Fischl ||
||10:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
||11:00 - 11:20 ||'''break''' || || ||
||11:20 - 12:05 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:05 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||1:00 - 1:30 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||
||1:30 - 2:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
||2:30 - 2:50 ||'''break''' || || ||
||2:50 - 3:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||3:50 - 5:00 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
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-=== Tuesday, Nov 5th - ROIs / Longitudinal / Multimodal / Group Analysis ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:40  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||9:40 - 10:10  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||10:10 - 10:30 ||'''break''' || ||
||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Melanie Ganz ||
||11:30 - 11:50 ||QDEC demonstration ||demo ||Nick Schmansky ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||''12:20 - 12:50'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:50 - 1:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||12:50 - 1:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||2:20 - 2:40 ||'''break''' || ||
||2:40 - 3:40 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||3:40 - 4:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||
||4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||5:00 - 5:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
-Line 58:
+Line 37:
-=== Wednesday, Nov 6th - fMRI / Diffusion / Q&A ===
+=== Tuesday, Nov 5th - Group Analysis / ROI Analysis / Multimodal ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Eugenio Iglesias ||
||10:20 - 10:40 ||'''break''' || ||
||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || Eugenio Iglesias ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Eugenio Iglesias ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:00 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 3:00  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||3:00 - 3:20 ||'''break''' || ||
||3:20 - 3:50  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:50 - 4:20|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||4:20 - 5:00 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||




=== Wednesday, Nov 6th - Diffusion / Multimodal / Longitudinal / Future Directions / Q&A ===
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-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||9:40 - 10:10 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||2:50 - 3:10 ||'''break''' || ||
||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||12:40 - 1:40 ||'''Lunch''' ||-- ||-- ||
||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||2:50 - 3:10 ||'''break''' & Evaluation|| ||
||4:25 - 5:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSuferCourse_OCT.pdf|Future Directions - Optical Coherence Tomography]]  ||talk || Caroline Magnain ||
||5:00 - 5:30 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
+||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 1|&do=get]] ||talk ||Doug Greve ||
||9:30 - 10:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 1]] ||tutorial ||staff ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||10:40 - 11:00 ||'''break''' || ||
||11:00 - 11:30 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||11:30 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:45 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2|&do=get]] ||talk ||Doug Greve ||
||2:15 - 3:00||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff ||
||3:00 - 3:20 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dDNaOUNxUF90NDJJOWdLNUx3Z2RiMHc6MA|Evaluation]]|| ||
||3:20 - 3:50 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||
||3:50 - 4:20 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||
||4:20 - 4:45 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||4:45 - 5:15 ||Future Directions  ||talk || Bruce Fischl, Lilla Zollei, Ender Konukoglu ||
||5:15 - 5:30 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||