Diff for "FsTutorial/Oct2014CourseSchedule"

Differences between revisions 2 and 17 (spanning 15 versions)

FreeSurfer Course, October 27-29, 2014
MGH, Charlestown Navy Yard, Building 114, Room D1

8:00 - 9:30am Registration Desk Open

Monday, Oct 27th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	tutorial	Paul Wighton
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Lilla Zollei
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:10	Analyzing the Individual Subject	talk	Doug Greve
11:10 - 11:30	break
11:30 - 12:10	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
12:10 - 1:10	Lunch (Suggestions for where to eat)	--	--
1:10 - 1:30	Freeview demonstration	demo	Allison Stevens
1:30 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk	Bruce Fischl
3:00 - 3:20	break
3:20 - 4:00	Quality Checking a Recon	demo	Allison Stevens
4:00 - 5:00	Troubleshooting Tutorial	tutorial	staff
5:00 - 5:15	Question and Answer Session (Answers to online questions here)	talk	staff

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).

Tuesday, Oct 28th - Group Analysis / ROI Analysis / Multimodal

Time	Title	Type	Lecturer
9:00 - 9:40	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
9:40 - 10:20	Group Analysis	talk	Martin Reuter
10:20 - 10:40	break
10:40 - 11:20	Group Analysis Tutorial	tutorial	staff
11:20 - 11:40	Multiple Comparisons	talk	Doug Greve
11:40 - 12:00	QDEC demonstration	demo	Martin Reuter
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Multiple Comparisons Tutorial	tutorial	staff
1:20 - 2:00	QDEC Tutorial	tutorial	staff
2:00 - 2:30	ROI Analysis	talk	Doug Greve
2:30 - 2:50	break
2:50 - 3:20	ROI Analysis Tutorial	tutorial	staff
3:20 - 3:50	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:50 - 4:30	Longitudinal Tutorial	tutorial	staff
4:30 - 5:00	optional technical talk - Registration Methods	talk	Lilla Zollei
5:00 - 5:15	Question and Answer Session (Answers to online questions here)	talk	staff

Wednesday, Oct 29th - Diffusion / Multimodal / Longitudinal / Future Directions / Q&A

Time	Title	Type	Lecturer
9:00 - 9:30	Multi-Modal Integration, Part 1	talk	Doug Greve
9:30 - 10:00	Multi-Modal Integration Tutorial, Part 1	tutorial	staff
10:00 - 10:30	Introduction to Diffusion MRI	talk	Anastasia Yendiki
10:30 - 10:50	break
10:50 - 11:20	Diffusion Processing Tutorial	tutorial	staff
11:20 - 12:00	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
12:00 - 1:00	Lunch	--	--
1:00 - 1:45	Tracula Tutorial	tutorial	staff
1:45 - 2:15	Multi-Modal Integration, Part 2	talk	Doug Greve
2:15 - 3:00	Multi-Modal Integration Tutorial, Part 2	tutorial	staff
3:00 - 3:20	break & Evaluation
3:20 - 3:50	Future Directions	talk	Bruce Fischl
3:50 - 4:20	optional technical talk - MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
4:20 - 4:50	optional technical talk - Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
4:50 - 5:05	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

FsTutorial/Oct2014CourseSchedule (last edited 2017-09-26 11:34:35 by MorganFogarty)

-  ⇤ ← Revision 2 as of 2014-04-27 15:22:28 → 
  Size: 7662
  Editor: AllisonStevens
  Comment:
+   ← Revision 17 as of 2014-10-27 00:11:54 → ⇥
  Size: 7657
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-'''!FreeSurfer Course, May 5-7, 2014 <<BR>>
+'''!FreeSurfer Course, October 27-29, 2014 <<BR>>
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-=== Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting ===
+=== Monday, Oct 27th - Introduction / Single Subject Analysis /Troubleshooting ===
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-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Ender Konukoglu ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt.pptx|Intro to FreeSurfer Jargon|&do=get]] ||talk || Ender Konukoglu ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial+fsjargon.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Paul Wighton ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial+fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Lilla Zollei ||
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-||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Bruce Fischl ||
||10:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
||11:00 - 11:20 ||'''break''' || || ||
||11:20 - 12:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||1:00 - 1:30 ||Freeview demonstration ||demo ||Louis Vinke ||
+||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
||11:10 - 11:30 ||'''break''' || || ||
||11:30 - 12:10 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||1:10 - 1:30 ||Freeview demonstration ||demo ||Allison Stevens ||
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-||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
+||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
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-||3:20 - 4:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
+||3:20 - 4:00 || Quality Checking a Recon ||demo ||Allison Stevens ||
 Line 33:
-Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>>
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. ''(If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).''
+Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>>
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
 Line 36:
-=== Tuesday, May 6th - Group Analysis / ROI Analysis / Multimodal ===
+=== Tuesday, Oct 28th - Group Analysis / ROI Analysis / Multimodal ===
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-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Ender Konukoglu  ||
+||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Martin Reuter  ||
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-||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || Doug Greve ||
||11:40 - 12:00 ||QDEC demonstration ||demo || Doug Greve ||
+||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Multiple Comparisons]] ||talk || Doug Greve ||
||11:40 - 12:00 ||QDEC demonstration ||demo || Martin Reuter ||
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-||2:00 - 2:30  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Martin Reuter||
+||2:00 - 2:30  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk || Doug Greve ||
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+||4:30 - 5:00 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.pptx|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
-Line 53:
+Line 55:
-=== Wednesday, Nov 6th - Diffusion / Multimodal / Longitudinal / Future Directions / Q&A ===
+=== Wednesday, Oct 29th - Diffusion / Multimodal / Longitudinal / Future Directions / Q&A ===
-Line 56:
+Line 58:
-Line 58:
+Line 59:
-||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 1|&do=get]] ||talk ||Doug Greve ||
+||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1|&do=get]] ||talk ||Doug Greve ||
-Line 60:
+Line 61:
-||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||10:40 - 11:00 ||'''break''' || ||
||11:00 - 11:30 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||12:10 - 1:10 ||'''Lunch''' ||-- ||-- ||
||1:10 - 1:55 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||1:55 - 2:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2|&do=get]] ||talk ||Doug Greve ||
||2:25 - 3:10||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff ||
||3:10 - 3:30 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dDNaOUNxUF90NDJJOWdLNUx3Z2RiMHc6MA|Evaluation]]|| ||
||3:30 - 4:00 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||
||4:00 - 4:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||
||4:30 - 4:55 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||4:55 - 5:25 ||Future Directions  ||talk || Bruce Fischl, Lilla Zollei, Ender Konukoglu ||
||5:25 - 5:40 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
+||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||10:30 - 10:50 ||'''break''' || ||
||10:50 - 11:20 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||11:20 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:45 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 2|&do=get]] ||talk ||Doug Greve ||
||2:15 - 3:00||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff ||
||3:00 - 3:20 ||'''break''' & Evaluation|| ||
||3:20 - 3:50 ||Future Directions  ||talk || Bruce Fischl ||
||3:50 - 4:20 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||
||4:20 - 4:50 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||
||4:50 - 5:05 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||