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=== 1.0 N3 intensity normalization: nu_correct_subject <subject name> === === 1.0 N3 intensity normalization: nu_correct <subject name> ===

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Image before and after comparisons (volume processing pipeline)

attachment:volumepipelineSmall.gif

1.0 N3 intensity normalization: nu_correct <subject name>

attachment:CN3Norm.jpg

2.0 Cortical intensity normalization: mri_normalize orig T1

attachment:CNorm.jpg

3.0 Cortical Talairach: talairach <subject name>

attachment:CTalairach.jpg

4.0 Cortical skull stripping: mri_watershed T1 brain

attachment:CStripping.jpg

5.0 Subcortical intensity normalization: mri_ca_normalize -mask brain nu $GCA transforms/talairach.lta norm

attachment:SCNormAndMask.jpg

6.0 Subcortical segmentation: mri_ca_label norm transforms/talairach.m3d $GCA aseg

attachment:SCSegment.jpg

7.0 Subcortical brain intensity normalization: mri_normalize norm brain

attachment:SCNormBrain.jpg

8.0 Subcortical white matter segmentation: mri_segment brain wm

attachment:SCSegmentWM.jpg

9.0 Auto segmentation Editing: mri_edit_wm_with_aseg wm aseg wm

attachment:SCSegmentEditWM.jpg

10.0 Filling: mri_fill wm filled

attachment:SCfilling.jpg

FsTutorial/VolumeProcStream (last edited 2021-09-22 11:36:27 by DevaniCordero)